Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g01047 ATGGCTCGGAGAAATGCTACCTTACCAATCCGTTTCTTCAAGATCATCCTCCAAACTAATCTTCAAAGACTTAAAATACCAAATAAGTTTACAAAGAGTCATGGAGTTGGTCTATCAAATCCAGTGTTGATCAAGTCTCCTGATGGCATTAAATGGAAAGTTTATTGGGAAAAAATCAATGGTGAGATTTGGTTTGAAAATGGTTGGGAGGATTTTACTCAAAATTACTCTCTACAACAAGGTTGTTTGGTGGTGTTTGAATATAAAGAAGGGACTTCAAAATTCCATGTACTCATACTTGGCCAGAACGCAGTGGAAATAGACTATGGCCCTTCATGTCACACTTATGATGATGAAAATAAAAATATTGATCATAGTGACGATGAATCGGTCGAGATTTTGGATGAAAAGGACAATGTTGATCATAGTGATGATGAATCAGTTATGATTTTGGATGAATTAAGTTCTCCTCGACCACATAAGAAAGTTAGAGGTGAGACCGAAAACACTACTAAGAGAACTTCATCCTTGAATTGGCCAAAGGAAGCTAAAGCTCAGAAAGCAACTTCAAAATTCAACTCATGCAATCCTTTTTTCACAATTCTCATAAAGCCTTATCATCTGGTAAACTATCTGTTGCATGGTGTACCAAGTTTAAAAGGGGTTATTGAGAACAAAGAGAAGTATGTGAAGCTGCAGATTGAAAAAAGATCATGGAATGTGAAATTGCTCCCTTGTCACGGAAATAACAATGGTCGGCAACTTTCGGCGGGTTGGCACTTGTTTGCAAGTGAAAATGGACTGCAACCAGGAAATGTTTGTATCTTTGAACTCATAAACAAGAAAGATTTAGTTTTTAAAGTTCATGTTTTCTAA 876 0.3642 MARRNATLPIRFFKIILQTNLQRLKIPNKFTKSHGVGLSNPVLIKSPDGIKWKVYWEKINGEIWFENGWEDFTQNYSLQQGCLVVFEYKEGTSKFHVLILGQNAVEIDYGPSCHTYDDENKNIDHSDDESVEILDEKDNVDHSDDESVMILDELSSPRPHKKVRGETENTTKRTSSLNWPKEAKAQKATSKFNSCNPFFTILIKPYHLVNYLLHGVPSLKGVIENKEKYVKLQIEKRSWNVKLLPCHGNNNGRQLSAGWHLFASENGLQPGNVCIFELINKKDLVFKVHVF 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g01047 291 CDD B3_DNA 11 100 IPR003340 GO:0003677
Trre5g01047 291 Gene3D - 7 104 IPR015300 -
Trre5g01047 291 ProSiteProfiles B3 DNA-binding domain profile. 9 103 IPR003340 GO:0003677
Trre5g01047 291 PANTHER B3 DOMAIN-CONTAINING 11 290 - -
Trre5g01047 291 SMART B3_2 198 289 IPR003340 GO:0003677
Trre5g01047 291 SMART B3_2 12 103 IPR003340 GO:0003677
Trre5g01047 291 Gene3D - 179 291 IPR015300 -
Trre5g01047 291 Pfam B3 DNA binding domain 226 291 IPR003340 GO:0003677
Trre5g01047 291 Pfam B3 DNA binding domain 19 99 IPR003340 GO:0003677
Trre5g01047 291 SUPERFAMILY DNA-binding pseudobarrel domain 192 291 IPR015300 -
Trre5g01047 291 CDD B3_DNA 237 291 IPR003340 GO:0003677
Trre5g01047 291 MobiDBLite consensus disorder prediction 158 181 - -
Trre5g01047 291 ProSiteProfiles B3 DNA-binding domain profile. 237 291 IPR003340 GO:0003677
Trre5g01047 291 SUPERFAMILY DNA-binding pseudobarrel domain 11 103 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g01047 Trre-Chr5 7290433 7291925 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g01047 8 291 B3 DNA Binding Superfamily AT3G18990 26.844 2.34e-34 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre5g01047 B3 6.2e-09 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g01047 - - tpra:123887513 422.935