Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g01041 ATGGGGCGTATTCCATGTTGTGAGAAGGACAATGTGAAGAGAGGTCAGTGGACACCTGAGGAAGATAACAAGCTCTCATCTTACATTGCTCAACATGGCACTCGCAACTGGCGCCTCATTCCCAAGAATGCTGGCCTTCAGAGATGTGGAAAGAGCTGCAGGCTAAGGTGGACTAATTACCTTCGTCCTGATCTTAAGCATGGCCATTTCTCGGATGCAGAAGAGCAAACCATTGTGAAGCTTCATTCAGTTTTTGGTAACAGGTGGTCACTCATAGCAGCCCAACTGCCAGGACGCACCGACAATGATGTCAAAAACCACTGGAACACCAAGCTGAAAAAGAAATTGTCAGGCATGGGTATAGACCCTGTTACCCACAAGCCATTCTCCCATCTAATGGCGGAAATTGCTACAACATTGGCACCCCCACAGGCAGCTCACCTAGCTGAAGCAGCGCTTGGTTGTTTCAAAGACGAGGTACTCCACCTTCTTACTAGGAAGCCAATTAACTACCAGGGCCAACATTCTAATGCAGCAATGGGGAATAACATCACCGATTACTTTAACTGTAAGCTAGAAGAAAAGGAAGATAATGTTGAGAAGATTAAGTTTGACCTATCAAAAGCCATACAACAAGAACATGAAATGGTACCCACAAATAAACCTTGGGACTCCACTGCAGCTACATCTGCGAGTTTTGCAATGCCATACAACGTTTTCCCTACGATGTCTGGGTTTCAGTTCAGTCCATCGTATTTTGGCAATAAAGGGGATGCATCACCATGGAACCAAAGTTTATGTACTGGAAGCACATGCACAGCCATGGATCAGCAAAGCCAGTTTCATGAAAAACTTGAAGAGGAAAATGGGGATGATTCCGAGGCTACAAAAGAAATTAGAAATCTATCCAATATATTCAACTCAGACTGTGTTGTGTGGGATTTACCAGCCGAAGATTTAATTAATCCCATGGTATAA 978 0.4427 MGRIPCCEKDNVKRGQWTPEEDNKLSSYIAQHGTRNWRLIPKNAGLQRCGKSCRLRWTNYLRPDLKHGHFSDAEEQTIVKLHSVFGNRWSLIAAQLPGRTDNDVKNHWNTKLKKKLSGMGIDPVTHKPFSHLMAEIATTLAPPQAAHLAEAALGCFKDEVLHLLTRKPINYQGQHSNAAMGNNITDYFNCKLEEKEDNVEKIKFDLSKAIQQEHEMVPTNKPWDSTAATSASFAMPYNVFPTMSGFQFSPSYFGNKGDASPWNQSLCTGSTCTAMDQQSQFHEKLEEENGDDSEATKEIRNLSNIFNSDCVVWDLPAEDLINPMV 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g01041 325 Gene3D - 14 66 - -
Trre5g01041 325 SMART sant 13 63 IPR001005 -
Trre5g01041 325 SMART sant 66 114 IPR001005 -
Trre5g01041 325 FunFam Transcription factor RAX3 7 67 - -
Trre5g01041 325 Gene3D - 69 128 - -
Trre5g01041 325 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Trre5g01041 325 CDD SANT 17 61 IPR001005 -
Trre5g01041 325 CDD SANT 70 112 IPR001005 -
Trre5g01041 325 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Trre5g01041 325 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Trre5g01041 325 FunFam transcription factor MYB80 69 129 - -
Trre5g01041 325 Pfam Myb-like DNA-binding domain 68 110 IPR001005 -
Trre5g01041 325 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Trre5g01041 325 Coils Coil 192 212 - -
Trre5g01041 325 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Trre5g01041 325 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Trre5g01041 325 PANTHER F14D16.11-RELATED 1 324 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g01041 Trre-Chr5 7246374 7247531 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g01041 1 325 MYB Transcription Factor Family AT5G56110 56.193 4.50e-118 341
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre5g01041 Myb_DNA-binding 1.6e-15 CL0123