Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g01030 ATGCAACCAAAGTCTGAAACTGCAAATCAACTGAGATCAGATCCTCATTCCTTTCAGCCCAGTGGTGTTTATTCTGAACCTTGGTGGCGTGGTGCTGGATACAATCCTGTGGCGCAATCAAAATCGATGTCTGGTGCCAATTCCTCCTCTCTTGATTGCCCCAATGGTGATTCGGAATCTAATGAGGAAGATCAGTCTATGTCCAATAGTGCGATGAATGAGGAAGATGATGATGCCGCTAAGGATTCACAGCCCGCTGCTCCTAATCAGTCAGGAAATTATGGGCAAGAGCAACAAGGAATGCAGAACACTGCATCATCTGCACTTACTATGCGTGAAGAATGCCTCACACACACTCCTCAGCTGGAACTTGTTGGTCATTCAATTGCATGTGCTACAAATCCTTATCAGGATCCATATTATGGGGGCATGATGGCAGCTTATGGCCACCAGCCATTGGGATATCCTCCTTTTATAGGAATGCCTCATGCCAGAATGCCTTTGCCCCTCGAGATGGCTCAAGAACCTGTTTATGTGAACGCCAAACAATACCAGGGAATTCTGAGGCGAAGACAAGCTCGTGCTAAAGCAGAGCTTGAAAGGAAGCTCATAAAATCAAGAAAGCCATATCTTCATGAATCTAGACATCAGCATGCTATGAGAAGGGCAAGAGGCACCGGAGGACGATTTGCAAAGAAAACTGATGGGGAGGGCTCAAACAACTCAGGAAAGGATAATGGCGCTGGTCCAGTCCTATCATCACAGTCAATTAGTTCATCTGGTTCAGAACCTTTGCCTTCTGACTCTGCCGAAACCTGGAACTCTCCCAACATGCGACAAGATGCAAGAGCATCAAATGAAAATGGTGGTGGCTCCTACCATAGTAACACCAATGGTATGCAATCTTCAAGGTATCAAGGTGAAAGAGTGGATGACGGCGGAGACTGTTCAGGGCAGCTACGTGGAAGCATATCCTCCAACGAGGCATCACAGAGGCGACTTGCAATCCAGTAG 1014 0.4694 MQPKSETANQLRSDPHSFQPSGVYSEPWWRGAGYNPVAQSKSMSGANSSSLDCPNGDSESNEEDQSMSNSAMNEEDDDAAKDSQPAAPNQSGNYGQEQQGMQNTASSALTMREECLTHTPQLELVGHSIACATNPYQDPYYGGMMAAYGHQPLGYPPFIGMPHARMPLPLEMAQEPVYVNAKQYQGILRRRQARAKAELERKLIKSRKPYLHESRHQHAMRRARGTGGRFAKKTDGEGSNNSGKDNGAGPVLSSQSISSSGSEPLPSDSAETWNSPNMRQDARASNENGGGSYHSNTNGMQSSRYQGERVDDGGDCSGQLRGSISSNEASQRRLAIQ 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g01030 337 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 14 288 IPR001289 GO:0003700|GO:0006355
Trre5g01030 337 MobiDBLite consensus disorder prediction 37 68 - -
Trre5g01030 337 MobiDBLite consensus disorder prediction 1 20 - -
Trre5g01030 337 PRINTS CCAAT-binding transcription factor subunit B signature 207 230 IPR001289 GO:0003700|GO:0006355
Trre5g01030 337 PRINTS CCAAT-binding transcription factor subunit B signature 176 198 IPR001289 GO:0003700|GO:0006355
Trre5g01030 337 SMART cbf3 172 233 IPR001289 GO:0003700|GO:0006355
Trre5g01030 337 MobiDBLite consensus disorder prediction 1 105 - -
Trre5g01030 337 ProSiteProfiles NF-YA/HAP2 family profile. 173 233 IPR001289 GO:0003700|GO:0006355
Trre5g01030 337 MobiDBLite consensus disorder prediction 319 337 - -
Trre5g01030 337 MobiDBLite consensus disorder prediction 206 337 - -
Trre5g01030 337 MobiDBLite consensus disorder prediction 235 305 - -
Trre5g01030 337 MobiDBLite consensus disorder prediction 208 227 - -
Trre5g01030 337 MobiDBLite consensus disorder prediction 84 105 - -
Trre5g01030 337 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 175 230 IPR001289 GO:0003700|GO:0006355
Trre5g01030 337 ProSitePatterns NF-YA/HAP2 subunit signature. 178 198 IPR018362 GO:0003677|GO:0016602
Trre5g01030 337 Gene3D - 173 235 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g01030 Trre-Chr5 7173323 7175640 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g01030 16 275 CCAAT-HAP2 Transcription Factor Family AT5G12840 55.344 2.10e-88 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Trre5g01030 CBFB_NFYA 1.4e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g01030 K08064 - gmx:100808378 527.324
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g01030 5 7173323 7175640 Trre5g01030 5 7173323 7175640 ECH