Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g01007 ATGACATCCTATTCACGGAGATCAAGGTATTCTGCCTCTCCCTCTCCATCGCCATCTCCATACAGGCGATACAGTAGGTCTTTGTCCAGGTCTCTATCAAGGTCCATATCCAGAAGCCGTTCGAGGAGCACATCCCGAGATGCAGAAAATCCGGGAAACAATCTATATGTGACAGGACTGTCTCCCAGAATTACAAAGAGAGAACTTGAAAAGCATTTTGCTTCTGAGGGAAAAGTTGTAGATGTCCATCTGGTTGTTGATCCATGGACAAGGGAATCCCGTGGTTTTGGATTTGTGACAATGGCGACTTTAGAAGAAGCTGATCGATGTGTGAAGTATCTGGATCGCTCTGTAATTGAAGGGCGTGTTATCATGGTGGAGAAGGCTAGAAGACGACGCGGTCGAACCCCAACACCTGGGAAATATCTAGGTCTCAGGACTATTCGAGGACGGCGCCGCTCTCCAAGCTACTCTCCTCGTCGTTCTCCAAGCTATTCTCCCTATCGAAGAAGCTACAGTCGTTCATCTTATTCTTCAGATCGCAGTCGGAGTCGTTCTTACTCACCTGAATACAGGCGAAGAAGGACCTACTCTCCTGACTACAGGCGAAGGAGGGCATACTCGCCATACTATAGTCGACGCAGGTCATACTATCGTTATGAGCGGCACAGGTCTTATTCTCGGTCTCGCTCTCCTTACAGCAGGTCTCCTGTCAGCATGCGTGACAGATCATACTCTCCCTATGGCTCCAGATATGACTCACCCGATGATAGCTACTATAGAAGGTACCGTTACAGATCGGTTTCTCGCAGTCTCTCACCCAAGCCGAGGAGGTCAAGGAGGAGCTATTCGCGGAGTGCCTCTCCTGTTCCAAGTGTCTCCCCCAGGCCAAGGAAGAGATCAGGAAGGAGTCATTCAAGAAGCTCTAGAAGGAGTGGTGGTTATTACAAATGTAAGCATTCTCGTTCAAGAAGCTCAAGTGTGAGCGCTAGTTCAAGATCGTTTTCAAGATCCAACACTCCTGGATCTACCTCCCCTTCCAATTGA 1047 0.4881 MTSYSRRSRYSASPSPSPSPYRRYSRSLSRSLSRSISRSRSRSTSRDAENPGNNLYVTGLSPRITKRELEKHFASEGKVVDVHLVVDPWTRESRGFGFVTMATLEEADRCVKYLDRSVIEGRVIMVEKARRRRGRTPTPGKYLGLRTIRGRRRSPSYSPRRSPSYSPYRRSYSRSSYSSDRSRSRSYSPEYRRRRTYSPDYRRRRAYSPYYSRRRSYYRYERHRSYSRSRSPYSRSPVSMRDRSYSPYGSRYDSPDDSYYRRYRYRSVSRSLSPKPRRSRRSYSRSASPVPSVSPRPRKRSGRSHSRSSRRSGGYYKCKHSRSRSSSVSASSRSFSRSNTPGSTSPSN 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g01007 348 Gene3D - 3 137 IPR012677 -
Trre5g01007 348 MobiDBLite consensus disorder prediction 130 208 - -
Trre5g01007 348 CDD RRM_SF 55 127 - -
Trre5g01007 348 MobiDBLite consensus disorder prediction 1 59 - -
Trre5g01007 348 SMART rrm1_1 54 127 IPR000504 GO:0003723
Trre5g01007 348 FunFam Serine/arginine-rich splicing factor SR45a 3 137 - -
Trre5g01007 348 MobiDBLite consensus disorder prediction 1 39 - -
Trre5g01007 348 MobiDBLite consensus disorder prediction 298 318 - -
Trre5g01007 348 SUPERFAMILY RNA-binding domain, RBD 35 142 IPR035979 GO:0003676
Trre5g01007 348 MobiDBLite consensus disorder prediction 157 184 - -
Trre5g01007 348 MobiDBLite consensus disorder prediction 222 348 - -
Trre5g01007 348 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 53 131 IPR000504 GO:0003723
Trre5g01007 348 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 43 317 - -
Trre5g01007 348 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 55 124 IPR000504 GO:0003723
Trre5g01007 348 MobiDBLite consensus disorder prediction 319 348 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g01007 Trre-Chr5 6985890 6988413 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g01007 54 135 Eukaryotic Initiation Factors Gene Family AT2G36660 34.146 3.03e-08 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g01007 - - mtr:25490768 234.187
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g01007 5 6985890 6988413 Trre5g01007 5 6985890 6988413 ECH