Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g01005 ATGAAGATACCACCAAGCCCCAACTCTCATCAATCTATCCAAAGAAAGAAAAACACAAGCAAAGGAAATGTCACAAATAAACACAATCCTAAGAATGATCATAGTACTATCACATATTTCAAGTCTATTGTCAAAAGTCTTTTTACATTGATTTCTGGGAAAACAAAAACAACCTCAGAAGCTGTTGAAAATGATTCAACAAGGAATAATAAAGTCAGAGGAGTATCATCTTCAACAACAGATGTATCATCTGATGGTTCTAAGGGTTCATCAAAATGGAAACCTTCTCAAACTTCAGCATCATCTAGCACTTCAAATAGTTTGATTGGAAAGGGAAATTTCACATTTGAGGAACTTTATAAGGCAACAGGAAAATTCTCCCAAGATAATATTATTGGGGAAGGGGCTTTTGGAATTGTATATAAGGGAAAGCTTTACGATGGAACTCTTGTTGCTGTAAAGTGTGCTAGAAAGGATGTACAAAAGAAGCACTTGGCCGAGTTCAAGAATGAAATAAACACATTGTCAAAAATTGAGCATCTGAATCTTGTGAGGTGGTATGGATATTTAGAGCATGGAGATGACAAGATTATAGTTATTGAATATGTAAATAATGGAACTCTTAGGGAACATCTAGATGGTGTGAGGGGAAATGTACTAGAAGTTGGCGAGCGTCTAGACATAGCAATCGATATAGCTCATGCAATTACATACCTTCATATGTACACAGATGATCCAATTATTCACAGAGACATAAAAGCATCAAATATCTTAATAACAGACAGACTAAGAGCCAAAGTGGCAGACTTTGGTTTTGCTAGGTTGGCTCCAGATGATCCAAATGCAACTCATATTTCAACTCAAGTTAAAGGAACAGCTGGAAGACATCCAGTTGAACCACAGAAACCACTCGACGAGAGAGTTACAATTAAATGGGCAATGCAGTTATTGAAACAAGGAGAAGCTGTGATTGCAATGGATCCAAGGCTTAGAAGAAATTCAACCTCAAACAAAGCTGTACAAAAGGTTTTCAAACTTGCTTTCCAATGCCTTGCACCTGTAAGACGATTGCGGCCATCCATGAAGAATTGTCAAGAGGTTCTATGGGAAATCCGCAAAGAGTTTAGAGACAAAGGTTTTTCTCGTCCTCCACCCATTGGTCCTCATCGTTCAGCAGATTTTCCTCAAAAAGATTCTAGGAAGAAAAGACATAAGACATTTGGTATTGAAGATGATAAGAAAATTAAATTTGTATCAGCATAA 1263 0.369 MKIPPSPNSHQSIQRKKNTSKGNVTNKHNPKNDHSTITYFKSIVKSLFTLISGKTKTTSEAVENDSTRNNKVRGVSSSTTDVSSDGSKGSSKWKPSQTSASSSTSNSLIGKGNFTFEELYKATGKFSQDNIIGEGAFGIVYKGKLYDGTLVAVKCARKDVQKKHLAEFKNEINTLSKIEHLNLVRWYGYLEHGDDKIIVIEYVNNGTLREHLDGVRGNVLEVGERLDIAIDIAHAITYLHMYTDDPIIHRDIKASNILITDRLRAKVADFGFARLAPDDPNATHISTQVKGTAGRHPVEPQKPLDERVTIKWAMQLLKQGEAVIAMDPRLRRNSTSNKAVQKVFKLAFQCLAPVRRLRPSMKNCQEVLWEIRKEFRDKGFSRPPPIGPHRSADFPQKDSRKKRHKTFGIEDDKKIKFVSA 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g01005 420 SMART serkin_6 126 375 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g01005 420 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 99 372 - -
Trre5g01005 420 Gene3D Phosphorylase Kinase; domain 1 86 202 - -
Trre5g01005 420 Gene3D Transferase(Phosphotransferase) domain 1 296 381 - -
Trre5g01005 420 Gene3D Transferase(Phosphotransferase) domain 1 203 295 - -
Trre5g01005 420 ProSitePatterns Serine/Threonine protein kinases active-site signature. 247 259 IPR008271 GO:0004672|GO:0006468
Trre5g01005 420 Pfam Protein tyrosine and serine/threonine kinase 129 282 IPR001245 GO:0004672|GO:0006468
Trre5g01005 420 MobiDBLite consensus disorder prediction 379 407 - -
Trre5g01005 420 MobiDBLite consensus disorder prediction 1 34 - -
Trre5g01005 420 ProSitePatterns Protein kinases ATP-binding region signature. 132 158 IPR017441 GO:0005524
Trre5g01005 420 MobiDBLite consensus disorder prediction 393 407 - -
Trre5g01005 420 ProSiteProfiles Protein kinase domain profile. 126 420 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g01005 420 SUPERFAMILY Protein kinase-like (PK-like) 102 371 IPR011009 -
Trre5g01005 420 MobiDBLite consensus disorder prediction 58 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g01005 Trre-Chr5 6974122 6976712 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g01005 74 411 Trihelix Transcription Factor Family AT1G70460 34.218 2.35e-50 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IV Trre5g01005 PK_Tyr_Ser-Thr 1.5e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g01005 - - gmx:100815871 560.066