Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g01000 ATGAAGTGTTGGGAGTTTCAAAATTTGAAACGCGATAAAAATGAAAAAGATTTAGATGATAAGTTTTTGGATTTGGCTAAAAGAAAGAAGTGGCAGAGATGTCCAAATTGCTCTATCTATGTCAAGAGAAGAAGTGGATGTGAACATATGACATGCAGGTGTAAATGTAGCTTCTGCTACCATTGTGGGAAGAAATGGAAGAGTGGACATATATGCAATAGAAGACATTCTTGA 234 0.3547 MKCWEFQNLKRDKNEKDLDDKFLDLAKRKKWQRCPNCSIYVKRRSGCEHMTCRCKCSFCYHCGKKWKSGHICNRRHS 77
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g01000 77 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 2 69 IPR031127 GO:0004842|GO:0016567
Trre5g01000 77 ProSiteProfiles TRIAD supradomain profile. 1 77 IPR044066 -
Trre5g01000 77 Pfam IBR domain, a half RING-finger domain 25 72 IPR002867 GO:0008270
Trre5g01000 77 Gene3D - 1 77 - -
Trre5g01000 77 SUPERFAMILY RING/U-box 20 72 - -
Trre5g01000 77 CDD Rcat_RBR_unk 30 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g01000 Trre-Chr5 6937156 6937482 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g01000 34 74 ARIADNE family AT3G27720 40.816 1.81e-06 42.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g01000 K11975 - mtr:25481406 129.798