Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g00996 ATGACTCGATCTCGTACTTCTCTTTTAGCAATGCAAAACACAATGAAGAAGAGAAAATCTATTTCAGAAAAATTTAGTGATGCAAAGAACAACAACAAGAAGAAACAAGCAACAACAACTACTAGTATCAAAACCAACAAACCAAACAAAGTTATCTGTAAAGGTCAATCCTCAAAAAGAATCACCTGCGGTATTTGTTTTGATTCTGTAACAGTTTCTAAATTATTCACAAACACTTCATGCGATCATCCTTTTTGTACTGTATGCATATCTAAGTATGTCAATGTTCAAAGAAAAGACAAAGTGTTGAAACTCAATTGTCCTAATCCAACATGTTCTGTTGAACTCAAACCAGAACATTTACAATCTATTTTGTCTAAGAAAGTTATCATTGATTGGGAATCTGCGATTTACGAGGCTTCGATTTCTTTGAAGGAGAAAATTTACTGTCCATATAAGAATTGTTCACTTTTGTTGGTCAACGACGGAGTCGAGGTTGTTACTAGCTGTGAATGTCCTTCTTGTCATAGGTTATTCTGTGCACAATGTAAAGTTCCGTGGCACGCGGATATGAGTTGTCGAGAATTTCTTGACTCGAAAAATGGTCGAGGTGAGAAACAATTGGAAGAGAAATTTTTAGCTTTGGCTAAAAAGAGAAAGTGGCAGAAATGTCCTAAATGTTCTATGCATGTTCAGAGAAAGGGTGGATGTGAACACATGTCTTGCAGGTGTGGAGATTATAACTTTCAAGTGCTTATAACAGATGACATTCAATTCGGAATCTCAGGTGGTGAATATGCTGAAGTTCTAGCTGTTAGTGATCACAATGATAGAATTTTTTGTACTTGA 849 0.3557 MTRSRTSLLAMQNTMKKRKSISEKFSDAKNNNKKKQATTTTSIKTNKPNKVICKGQSSKRITCGICFDSVTVSKLFTNTSCDHPFCTVCISKYVNVQRKDKVLKLNCPNPTCSVELKPEHLQSILSKKVIIDWESAIYEASISLKEKIYCPYKNCSLLLVNDGVEVVTSCECPSCHRLFCAQCKVPWHADMSCREFLDSKNGRGEKQLEEKFLALAKKRKWQKCPKCSMHVQRKGGCEHMSCRCGDYNFQVLITDDIQFGISGGEYAEVLAVSDHNDRIFCT 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g00996 282 ProSitePatterns Zinc finger RING-type signature. 81 90 IPR017907 -
Trre5g00996 282 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 56 143 IPR013083 -
Trre5g00996 282 SUPERFAMILY RING/U-box 210 245 - -
Trre5g00996 282 CDD BRcat_RBR_unk 145 196 - -
Trre5g00996 282 SUPERFAMILY RING/U-box 143 198 - -
Trre5g00996 282 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 25 249 IPR031127 GO:0004842|GO:0016567
Trre5g00996 282 MobiDBLite consensus disorder prediction 19 41 - -
Trre5g00996 282 Gene3D - 191 249 - -
Trre5g00996 282 ProSiteProfiles TRIAD supradomain profile. 59 282 IPR044066 -
Trre5g00996 282 SMART ibrneu5 131 193 IPR002867 GO:0008270
Trre5g00996 282 FunFam RBR-type E3 ubiquitin transferase 58 144 - -
Trre5g00996 282 SUPERFAMILY RING/U-box 58 140 - -
Trre5g00996 282 ProSiteProfiles Zinc finger RING-type profile. 63 108 IPR001841 -
Trre5g00996 282 Pfam IBR domain, a half RING-finger domain 142 193 IPR002867 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g00996 Trre-Chr5 6912840 6914732 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g00996 53 249 C3H Transcription Factor Family AT2G19610 28.571 1.36e-21 91.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g00996 K11975 - tpra:123915135 380.948