Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g00995 ATGAAAAGGGCTGAAGCTGAAAATGATAGAAAATTTTTGGAATTGGCCAGAAGAGAAATGTGGCAGAAATGTCCTATATGTTCCATCTATGTTGAGAGGCATAGTGGATGTGAACACATTCAGTGTAGGTGTGGATGTAATTTTTGTTACATGTGTGGAAAGTTTTGGGAGCATGGACATCTATGCAACAAATCGTCTACATAA 204 0.3775 MKRAEAENDRKFLELARREMWQKCPICSIYVERHSGCEHIQCRCGCNFCYMCGKFWEHGHLCNKSST 67
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g00995 67 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 7 59 IPR031127 GO:0004842|GO:0016567
Trre5g00995 67 ProSiteProfiles TRIAD supradomain profile. 1 67 IPR044066 -
Trre5g00995 67 SUPERFAMILY RING/U-box 7 62 - -
Trre5g00995 67 Gene3D - 1 67 - -
Trre5g00995 67 Pfam IBR domain, a half RING-finger domain 15 60 IPR002867 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g00995 Trre-Chr5 6909762 6910068 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g00995 24 54 ARIADNE family AT3G27720 45.161 3.55e-06 40.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g00995 - K11975 mtr:25481406 107.071