Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g00988 ATGAAGTGGGAAATGAAAATTCTTTCACCTAATTCTCATCCTCATGCACCATTTGTTCAAAATTCAAACAATACCAACAATTGGTTTTTGGAAGATAATAGCAGCAATAGCATCATTAACAGGAACACAAAATGGACTCCTGCAGAGAACAAATTGTTTGAAAATGCTCTAGCAGTTTACGATAAGGATACGCCGGATCGGTGGCATAAAGTAGCTGAAATGATACCTGGAAAGAGTGTTATTGATGTGATGAATCAGTATAAGGAATTAGAAGCTGATGTTTGTAACATAGAAGCTGGTTTAATTCCAATTCCTGGTTATAGTACTAGTACTACTAGTACTACTTCACCTTTTACCTTAGATTGGGTTAATTCTTCTGGTTATGATGCTTTTAGAGGAATCAATTCAAAGAGAGGCTCTTCTGGTAGATCTCCTGATCAAGAAAGGAAAAAAGGTGTACCATGGACTGAAGAAGAACACAAGTTATTTCTATTGGGATTGAAAAAGTATGGAAAAGGTGATTGGAGAAACATTTCAAGGAATTTTGTGATAACAAGAACACCAACACAAGTAGCTAGCCATGCTCAGAAGTATTTCATAAGACAACTTTCAGGAGGCAAAGACAAAAGAAGAGCTAGCATTCATGACATAACAACAGTTAATCTCACAGAAACTTCTAGAACTTCGCCAAATTCCGAAGACACAAAAAGATTATCCACTTCACCAAACCATAACAATTCAATGAATATCAACAAGTATTCAACTGTTAACACCACTTCTGAGATGCATTTTCAACCAGCTATGACAGCATTCAATCCTGCTACACATGAACAAATTTTCATGTCTCCTTATGGAGTTAATAATAACTCTTATGGATTTAAAATGCAGCAAGGTCAAAATATGCATAGAAATTATCCTCTTCATGAGTCTTCTTACTTTGGACCTCAGACACAAAACATGGTTTTCCAAATGCAATCTTCTCAACAACACTATTCACATGCATGA 1005 0.3562 MKWEMKILSPNSHPHAPFVQNSNNTNNWFLEDNSSNSIINRNTKWTPAENKLFENALAVYDKDTPDRWHKVAEMIPGKSVIDVMNQYKELEADVCNIEAGLIPIPGYSTSTTSTTSPFTLDWVNSSGYDAFRGINSKRGSSGRSPDQERKKGVPWTEEEHKLFLLGLKKYGKGDWRNISRNFVITRTPTQVASHAQKYFIRQLSGGKDKRRASIHDITTVNLTETSRTSPNSEDTKRLSTSPNHNNSMNINKYSTVNTTSEMHFQPAMTAFNPATHEQIFMSPYGVNNNSYGFKMQQGQNMHRNYPLHESSYFGPQTQNMVFQMQSSQQHYSHA 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g00988 334 ProSiteProfiles SANT domain profile. 155 203 IPR017884 -
Trre5g00988 334 Pfam Myb-like DNA-binding domain 44 89 IPR001005 -
Trre5g00988 334 Pfam Myb-like DNA-binding domain 154 199 IPR001005 -
Trre5g00988 334 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 41 313 IPR043363 -
Trre5g00988 334 NCBIfam myb-like DNA-binding domain, SHAQKYF class 150 202 IPR006447 GO:0003677
Trre5g00988 334 CDD SANT 154 199 IPR001005 -
Trre5g00988 334 FunFam Transcription factor SRM1 38 104 - -
Trre5g00988 334 SUPERFAMILY Homeodomain-like 149 202 IPR009057 -
Trre5g00988 334 CDD SANT 44 90 IPR001005 -
Trre5g00988 334 Gene3D - 153 203 - -
Trre5g00988 334 Gene3D - 37 104 - -
Trre5g00988 334 MobiDBLite consensus disorder prediction 134 154 - -
Trre5g00988 334 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 147 203 IPR017930 -
Trre5g00988 334 FunFam transcription factor MYB1R1 153 204 - -
Trre5g00988 334 SUPERFAMILY Homeodomain-like 43 98 IPR009057 -
Trre5g00988 334 ProSiteProfiles Myb-like domain profile. 147 199 IPR001005 -
Trre5g00988 334 SMART sant 151 201 IPR001005 -
Trre5g00988 334 SMART sant 41 93 IPR001005 -
Trre5g00988 334 MobiDBLite consensus disorder prediction 222 250 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g00988 Trre-Chr5 6854562 6856065 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre5g00988 Myb_DNA-binding 1.7e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g00988 - - cam:101514273 519.62