Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g00986 ATGGCTCCTATACTTGGACATGCATTAATCTCTCATATAGTATTCATCCTTATTATTGGTTTACTCTCAACATTATTCCTAGTGATCCCTTCTTCTTGTTTTAATCCCAACAAGTTAGTTAATTTAACTTCATACTCCTCATCTCATTCATCTTGGTCATCTTCAGTGGCCACTTGGTATGGAGATGCCAACGGTGATGGAAGTGAAGATGGTGCTTGTGGATATGGAAATGCAGTTGGAGAACCTCCATTCTTTTCAATGATATCGGCCGGAAGTCCTCTCATCTATAACTCAGGCAAAGGCTGTGGTTCTTGTTATGAGGTGAAGTGCACTGAAAATTCTGCATGCTCAGGCAATCCTGTGAGTGTGGTTATCACTGATGAGTGTGTTGAGTGTGGCTCAGATGCTCAATATCATTTTGATTTGAGTGGCAGTGCTTTTAGTTCCATGGCTATTTCAGGTAGAAATCAAGAGCTACGCTATGCTGGGAAACTAGCCATTCAACATAGAAGAGTTTCATGCAACTACATTGGTATGTCAATAGCTTTCCACGTGGACATTGGATCAAACCAAGACTATTTTGCTATCTTGATTGAATATGTGAATGGAGATGGTAATCTTAACAAAGTTGAACTCATGGAAGCAATTCACTCAGCCTCTTGGAATACCATGAAACAATCATGGGGTGCTCTTTGGAAACTTAGTAAAGGGGCACCATTGAAAGCACCATTTTCTATTAAGCTAACCACACTTGAGTCTGGCAACACTTTTGTGGCCCAGAATGTGATCCCTATAGATTGGGAGCCTGGTCAGACATATTCATCAGTTGGGAATTTTTAA 840 0.4048 MAPILGHALISHIVFILIIGLLSTLFLVIPSSCFNPNKLVNLTSYSSSHSSWSSSVATWYGDANGDGSEDGACGYGNAVGEPPFFSMISAGSPLIYNSGKGCGSCYEVKCTENSACSGNPVSVVITDECVECGSDAQYHFDLSGSAFSSMAISGRNQELRYAGKLAIQHRRVSCNYIGMSIAFHVDIGSNQDYFAILIEYVNGDGNLNKVELMEAIHSASWNTMKQSWGALWKLSKGAPLKAPFSIKLTTLESGNTFVAQNVIPIDWEPGQTYSSVGNF 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g00986 279 SUPERFAMILY PHL pollen allergen 181 275 IPR036749 -
Trre5g00986 279 SUPERFAMILY Barwin-like endoglucanases 41 178 IPR036908 -
Trre5g00986 279 PRINTS Major pollen allergen Lol pI signature 230 247 IPR005795 GO:0005576|GO:0019953
Trre5g00986 279 PRINTS Major pollen allergen Lol pI signature 151 166 IPR005795 GO:0005576|GO:0019953
Trre5g00986 279 PRINTS Major pollen allergen Lol pI signature 110 120 IPR005795 GO:0005576|GO:0019953
Trre5g00986 279 PRINTS Major pollen allergen Lol pI signature 199 214 IPR005795 GO:0005576|GO:0019953
Trre5g00986 279 PRINTS Major pollen allergen Lol pI signature 183 198 IPR005795 GO:0005576|GO:0019953
Trre5g00986 279 PRINTS Major pollen allergen Lol pI signature 90 101 IPR005795 GO:0005576|GO:0019953
Trre5g00986 279 PRINTS Expansin/Lol pI family signature 92 110 IPR007118 GO:0005576
Trre5g00986 279 PRINTS Expansin/Lol pI family signature 51 66 IPR007118 GO:0005576
Trre5g00986 279 PRINTS Expansin/Lol pI family signature 221 235 IPR007118 GO:0005576
Trre5g00986 279 PRINTS Expansin/Lol pI family signature 69 87 IPR007118 GO:0005576
Trre5g00986 279 PRINTS Expansin/Lol pI family signature 261 275 IPR007118 GO:0005576
Trre5g00986 279 PRINTS Expansin/Lol pI family signature 162 178 IPR007118 GO:0005576
Trre5g00986 279 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 192 275 IPR007117 -
Trre5g00986 279 PANTHER EXPANSIN-B3 28 276 - -
Trre5g00986 279 Pfam Lytic transglycolase 89 154 IPR009009 -
Trre5g00986 279 CDD DPBB_EXPB_N 56 174 - -
Trre5g00986 279 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 70 179 IPR007112 -
Trre5g00986 279 SMART dpbb_1 88 169 IPR007112 -
Trre5g00986 279 Gene3D - 37 174 IPR036908 -
Trre5g00986 279 Gene3D - 175 276 IPR036749 -
Trre5g00986 279 Pfam Expansin C-terminal domain 181 264 IPR007117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g00986 Trre-Chr5 6839122 6841426 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g00986 33 279 Expansin Gene Family AT1G65680 55.466 1.01e-102 299
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g00986 - - gmx:548090 403.29