Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g00974 ATGGCTTCTATTGCCACTTTCTTTAACAAGTTTTGCTATCTTTTTATCCTCATTGTTCATCTTGGTTGCTTCATGTTCACCACCTCCACTGTCGCCGCCACCGGAAAAAAAGATAACCGCCATTTATTATCATCAAAGAAACGAAAAATCTCACCTTTATCTCAACCATCTTCACCTTCACACCCTAAATTCAAAACCCATAAAGCCATTTCTTCTTCTTGGCATTTCATCAAACACCTTTTCTCCACTAACTCTTGCAAAACCGCCACCGCTACCACCACCACTCAGTCATCACCTCAATCCACCTCCACCATCACTTCAACCACCCCCAAATCCTCTCAACAATCTCTCATCTCATTGGTTCAACCCGACCCGAATTTTTCTGATGCACCACGCAAGAAACAACCCGAATCAGATATCTCCGCCGACAACAACCTCTTCTTCCCTCTCCGCAACGACATCTTCCCATGCACCGTGTGCGGCGAGATTTTCCAGAAACCAAACCTCCTAGAAAATCACCAATCCACAAACCACGCCGTAGCGGAACTCCTCGGATCCGACCCGGGTCATAACATAGTCCAAATCATATTCAAATCGGGTTGGCCCGAAACAAACTTCCCAAATATCCACCGAATCCTAAAGATCCACAACAGCCAGAAAATCCTCTCAAAATTCGAAGAATATCGCGAAACCGTGAAATCAAAAGCGGCGCGTAACACGCGCCGCCGCGACGAACGCTGCATCGCCGACGGAAACGAACTCATGCGTTTTCACTGTTCAACGTTTCTATGCGAGTTGGGACATAACGGGAATTCATCGATTTGTTCTCAACAATTTTGTAATATTTGCGGAATTATTAAATCAGGTTTTTCACCAAAATTAGATGGAATTTCCACGCTGTCAACTAGCTGGAGGGCAAATTCGTCAATTCCTGATGACATGGAACGTGAATTTTCGTTCATGAATGTGAAACGGGCCATGCTTGTTTGCCGGGTCATTGCGGGCCGGGTCGGATCTGAATTGGATGATGAGTTGGATAAAACTGATGGAGGTTTTGATTCTGTGATGGCGCGTGCAGAGAGTGGTGTGTACACCCGACTTGATGATGAGGAGTTGGTTGTTTTTAATCCAAGGGCTGTGCTTCCTTGTTTTGTTATTGTGTATAGTGTGTGA 1173 0.4527 MASIATFFNKFCYLFILIVHLGCFMFTTSTVAATGKKDNRHLLSSKKRKISPLSQPSSPSHPKFKTHKAISSSWHFIKHLFSTNSCKTATATTTTQSSPQSTSTITSTTPKSSQQSLISLVQPDPNFSDAPRKKQPESDISADNNLFFPLRNDIFPCTVCGEIFQKPNLLENHQSTNHAVAELLGSDPGHNIVQIIFKSGWPETNFPNIHRILKIHNSQKILSKFEEYRETVKSKAARNTRRRDERCIADGNELMRFHCSTFLCELGHNGNSSICSQQFCNICGIIKSGFSPKLDGISTLSTSWRANSSIPDDMEREFSFMNVKRAMLVCRVIAGRVGSELDDELDKTDGGFDSVMARAESGVYTRLDDEELVVFNPRAVLPCFVIVYSV 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g00974 390 MobiDBLite consensus disorder prediction 91 123 - -
Trre5g00974 390 MobiDBLite consensus disorder prediction 42 65 - -
Trre5g00974 390 ProSiteProfiles Zinc finger C2H2 type domain profile. 155 179 IPR013087 -
Trre5g00974 390 ProSitePatterns Zinc finger C2H2 type domain signature. 157 178 IPR013087 -
Trre5g00974 390 Gene3D - 180 389 - -
Trre5g00974 390 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 73 388 - -
Trre5g00974 390 MobiDBLite consensus disorder prediction 48 65 - -
Trre5g00974 390 SUPERFAMILY ADP-ribosylation 182 389 - -
Trre5g00974 390 MobiDBLite consensus disorder prediction 91 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g00974 Trre-Chr5 6769313 6770485 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g00974 74 390 C2H2 Transcription Factor Family AT2G29660 53.799 1.02e-111 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre5g00974 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g00974 - - gmx:100785244 550.821