Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g00973 ATGAAGCTCTCACTCTTTGGATTTGGAAAAAAAGATTCGTCAAAACAACTTCCCTCCCATACTCAAGAAGAAAACAAAACATGCGGAATATGTTTTGATCAGAAAGCAAATTCTGATATATTTGAATTAAGATCCAAGGTCTTCAAAAGACGAAAATGCAAGCACGTCTTTTGCATTGACTGCATACGCACGTATGTAGCAATTCGAATAAATGATAATGCTTATAAGGTGATGTGTCCAGGTCCAAGTTGTTGTGTGAAATTTAAGCTAAAACGTTTGAAACACATTTTGCCTAATGAACTTGTTGCTCAATGGAAGTATTTAATTTCTGAGTCTTCTATTCCCTCCAAGCCAAAGAATTACTGTCCTTATCAGAATTGTTCTGTTTTGTTGGGGGAAGGTAATGACCTGAAAGGAGAACTTGTCAACCAGTCTAAGTGTCCTTCGTGTCGCAGACTCTTTTGTGCACCGTGCAAAGTTCCATGGCATACAGGAATGAGTTGTCAGCAATTCCAACAATTGAAAAAGAATGACAAAAATGATTTGGATAACAAATTTATGGAGTTGGCCAAAAAACAACAGTGGCAAAGATGTCCAAATTGCTCTATGTATGTCAAGAGAAGTGATGGGTGCAGTTTCATGAAATGCAGGTGTGGATGCAAATTCTGCTACAAATGTGGGAAGAAGCGATTGTTTCAACATAAATGCAGTAGTACTTAG 720 0.375 MKLSLFGFGKKDSSKQLPSHTQEENKTCGICFDQKANSDIFELRSKVFKRRKCKHVFCIDCIRTYVAIRINDNAYKVMCPGPSCCVKFKLKRLKHILPNELVAQWKYLISESSIPSKPKNYCPYQNCSVLLGEGNDLKGELVNQSKCPSCRRLFCAPCKVPWHTGMSCQQFQQLKKNDKNDLDNKFMELAKKQQWQRCPNCSMYVKRSDGCSFMKCRCGCKFCYKCGKKRLFQHKCSST 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g00973 239 CDD Rcat_RBR_unk 194 229 - -
Trre5g00973 239 CDD BRcat_RBR_unk 116 171 - -
Trre5g00973 239 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 15 229 IPR031127 GO:0004842|GO:0016567
Trre5g00973 239 SUPERFAMILY RING/U-box 185 235 - -
Trre5g00973 239 MobiDBLite consensus disorder prediction 1 21 - -
Trre5g00973 239 ProSitePatterns Zinc finger RING-type signature. 53 62 IPR017907 -
Trre5g00973 239 ProSiteProfiles TRIAD supradomain profile. 24 239 IPR044066 -
Trre5g00973 239 SUPERFAMILY RING/U-box 121 173 - -
Trre5g00973 239 Pfam Zinc finger, C3HC4 type (RING finger) 28 80 IPR018957 GO:0046872
Trre5g00973 239 SMART ibrneu5 103 168 IPR002867 GO:0008270
Trre5g00973 239 ProSiteProfiles Zinc finger RING-type profile. 28 80 IPR001841 -
Trre5g00973 239 Pfam IBR domain, a half RING-finger domain 109 168 IPR002867 GO:0008270
Trre5g00973 239 SUPERFAMILY RING/U-box 23 116 - -
Trre5g00973 239 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 22 118 IPR013083 -
Trre5g00973 239 Gene3D - 165 238 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g00973 Trre-Chr5 6765366 6766194 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g00973 24 227 C3H Transcription Factor Family AT2G19610 27.014 1.43e-18 82.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g00973 K11975 - mtr:25481406 229.18