Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g00969 ATGAAAGAAGCACGTGTAGGTGGTGGTGATCATATAAAGACCACTAACCACTCTTCAATTGGTCCTCATTTGACTGCAATTGATAGATTCTTATGGAGTCAACAAAACCATATCCCTCAAAAGAAATTTCAACAAAGTGTTGATGATCAAAATATGTGTAGCTTTGATTGTTCTAATGCTTCAACCTATAGTTTTATGTGGCCTAATAATAATATGATCATGAATCAAGAAGCTAGCTTTGTTGACCATCTTTTGGCAAATGAAGAGGTGATGAATTGGACACATCAAATTCCTTCATTGTGTGTGGAAAAAGAAGATGTGGTCAATGGTTTAGGGTTTAAGGGTGCAAAAGTTGTTGGAAGAAAACCTAAGAAAGTGCCTTCTTTTTCTTTGATCAAAGGACAATGGACTGAAGAAGAAGACAGGAAATTGGTGAAATTGGTGAAGCAACATGGTGTAAGAAAATGGTCTCAAATAGCTGAGAAGTTGGAGGGAAGAGCTGGAAAGCAGTGTCGAGAGAGATGGCATAATCATCTAAGGCCAGATATTAAAAAAGAGAGTTGGAGTGAAGAAGAAGAAAGGATACTAGTAGAAAGCCATGGCACGATTGGAAACCGTTGGGCTGAGATAGCGAAGAAAATTCCCGGAAGAACTGAGAATGCAATCAAGAATCATTGGAATGCAACAAAAAGGAGACAAAATTCAAAGAGAAAGAACAAAAGGCCTCAAACCACAAATGGTAAACCACAATCTTCTATTCTTCAAGACTATATCAAAACTTTGACTCAAAAACCGTCCACCACCACTACTACTACTACTACTACCACTACCACTACTGCTGCTGTGTCTAGCTCCACGTCAGCATTCTCGGAGGACCCTTCAAACCAATCCAACCTTGTTTTTTCCAACTTTTCTCATGAAAATTCATCATCACCACTTATAGCTGAATCTTATGATGATGAACTTCTCTTCATGCAACAACTTTTCAAGGTGAATAATAATGCTGAGCCAGTTAACCCCTACTCCAAGAAACACTCTTCAAACTCTTATTCATTGGATTATTCTTCTCAAACTAATAACAATAATCAGATTCTTTCTGATGTTAATGATAGCGGTTTTGTTCATTCCAATTCCAATTACCCTATGATGAATTACCTTAATTCTGATCACTACTTTTCACCAATGATGAATGGAATTCATCACAACCAGAGTAATGTGGAGTTGCAACTTGGGAATATGAATTATTCAGATGGAAAGAGAGAGATGGATTTGTTGGAGTTGGTTTCTTCTGCTCAGTTTTTTTAA 1305 0.3724 MKEARVGGGDHIKTTNHSSIGPHLTAIDRFLWSQQNHIPQKKFQQSVDDQNMCSFDCSNASTYSFMWPNNNMIMNQEASFVDHLLANEEVMNWTHQIPSLCVEKEDVVNGLGFKGAKVVGRKPKKVPSFSLIKGQWTEEEDRKLVKLVKQHGVRKWSQIAEKLEGRAGKQCRERWHNHLRPDIKKESWSEEEERILVESHGTIGNRWAEIAKKIPGRTENAIKNHWNATKRRQNSKRKNKRPQTTNGKPQSSILQDYIKTLTQKPSTTTTTTTTTTTTTAAVSSSTSAFSEDPSNQSNLVFSNFSHENSSSPLIAESYDDELLFMQQLFKVNNNAEPVNPYSKKHSSNSYSLDYSSQTNNNNQILSDVNDSGFVHSNSNYPMMNYLNSDHYFSPMMNGIHHNQSNVELQLGNMNYSDGKREMDLLELVSSAQFF 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g00969 434 MobiDBLite consensus disorder prediction 216 253 - -
Trre5g00969 434 PANTHER MYB PROTEIN-RELATED 111 252 - -
Trre5g00969 434 MobiDBLite consensus disorder prediction 1 20 - -
Trre5g00969 434 Gene3D - 186 254 - -
Trre5g00969 434 MobiDBLite consensus disorder prediction 229 243 - -
Trre5g00969 434 SMART sant 184 232 IPR001005 -
Trre5g00969 434 SMART sant 132 181 IPR001005 -
Trre5g00969 434 SUPERFAMILY Homeodomain-like 130 226 IPR009057 -
Trre5g00969 434 Pfam Myb-like DNA-binding domain 136 193 - -
Trre5g00969 434 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 128 183 IPR017930 -
Trre5g00969 434 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 184 234 IPR017930 -
Trre5g00969 434 CDD SANT 136 179 IPR001005 -
Trre5g00969 434 ProSiteProfiles Myb-like domain profile. 133 179 IPR001005 -
Trre5g00969 434 ProSiteProfiles Myb-like domain profile. 180 230 IPR001005 -
Trre5g00969 434 Gene3D - 132 184 - -
Trre5g00969 434 FunFam Transcriptional activator Myb isoform A 132 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g00969 Trre-Chr5 6745728 6748373 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g00969 21 431 MYB Transcription Factor Family AT5G58850 37.472 3.06e-77 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre5g00969 Myb_DNA-bind_6 8.4e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g00969 K09422 - gmx:100786295 383.645