LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre5g00965	ATGCCTTCAATTGCTTCTAAACGCAAACTCAGATCTCCCGCAACAAAATCTCTTCCAACCACCGCTTCTCCGCCCACTCGTAAATCCCCCCGCCGTTGCACCTCTGCAACTCCCAATTCTGTTACAACTGTAGTTCGCAAGATCCTCACCGATGAGAATCAAATCGAATCGTGTCAACGTGAATCTGCTTCCGTTAAATCTCGATGGAATCCCAAAGATGGTGAGCAATTGAGGATGGTGAAGGAGGTATTGCACTTGTCTACAGCACCGTCTACGATGGTGTGTCGTGAGGAAGAGCAAAATGTGGTGTTGGGGTTTTGTAAAGGTTGTGTTGAGCATGAAAAGGCCGGGAGTCTTTACATATGTGGGTGTCCTGGAACTGGGAAATCGCTATCTATGGAGAAAGTGAAAGTGAATTTACTCAATTGGGCTACAGAGGGAGGTTTTCCACTGCCGGAGGTTTTATCTGTAAATTGTACATCCATGTCAAATACAACTGATATTTTCACAAAGATACTCGGGTTACACAAAACCCTGGGAAAAAAGGGTTCAGACACACCCTTAAAGCAACTTCAGAACTTGTATTCTCATAAATCGCCTACAACGAACATGATATTGATAGTAGCAGATGAATTAGATTATCTAATAACCAAAGACAGAGCTGTACTCCATGATCTTTTCATGCTCACCACATTCCCTTTTTCCAGATGTATATTGATAGGTGTAGCAAATGCAATTGACCTAGCTGATCGGTTTCTTCCAAGGCTTACTGCATTAAATTGCAAGCCTACGGTTGTAACTTTTAGGGCATACACTAAAGATCAGATCCTTAGGATTCTTGAAGAGAGGCTAAATGAACTTCCTTACATTGTCTTCCAACGTCAAGCATTGGAACTATGTGCCAGGAAAGTGGCTGCTGCTTCTGGAGATATGCGAAATGCTCTCTCGATATGCAGGAGTGCAATAGAGATGCTAGAAATGGAAATTAGAGATTCTGCTTGCAATTTGAATACTTTGGAAGAGAAATCATCCTCAGAACTAAATCTTCCCACAGCTCCAGATTGTGTTAAAAAACAAGAATTTGATATGGTAAGGATTGATCATATGGCTCTTGCCCTGTCCAAAACATATAGATCACCAGTAGTGGATACAATACAATCTCTGCCACATCATCAACAGATTATACTCTGCTCTTCAATGAAACATTTCCGAGGATCCAAGAAAGACTCAAACCTTGGCGAGTTATATAAATCTTATGCGGCTATATGCAAATCATCACTAATTCCCCCGGCTGGATTCATGGAATTTTCAAACATGTGCAGAGTGCTAAATGACCAGGGCCTTATTAAACTAGGACAATCCCGAGACGATAAATTGAGAAGAGTGACACCCAAAGTAGATGAAGGAGATATCACTTTTGCATTGCAGGGAATCCGCTTTTTTCGAAATTGTCTTCAATGA	1461	0.4155	MPSIASKRKLRSPATKSLPTTASPPTRKSPRRCTSATPNSVTTVVRKILTDENQIESCQRESASVKSRWNPKDGEQLRMVKEVLHLSTAPSTMVCREEEQNVVLGFCKGCVEHEKAGSLYICGCPGTGKSLSMEKVKVNLLNWATEGGFPLPEVLSVNCTSMSNTTDIFTKILGLHKTLGKKGSDTPLKQLQNLYSHKSPTTNMILIVADELDYLITKDRAVLHDLFMLTTFPFSRCILIGVANAIDLADRFLPRLTALNCKPTVVTFRAYTKDQILRILEERLNELPYIVFQRQALELCARKVAAASGDMRNALSICRSAIEMLEMEIRDSACNLNTLEEKSSSELNLPTAPDCVKKQEFDMVRIDHMALALSKTYRSPVVDTIQSLPHHQQIILCSSMKHFRGSKKDSNLGELYKSYAAICKSSLIPPAGFMEFSNMCRVLNDQGLIKLGQSRDDKLRRVTPKVDEGDITFALQGIRFFRNCLQ	486

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre5g00965	486	FunFam	Cell division control protein	260	385	-	-
	Trre5g00965	486	Coils	Coil	322	342	-	-
	Trre5g00965	486	Pfam	AAA lid domain	294	326	IPR041083	-
	Trre5g00965	486	Gene3D	-	381	471	IPR036388	-
	Trre5g00965	486	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	82	331	IPR027417	-
	Trre5g00965	486	Gene3D	-	73	263	IPR027417	-
	Trre5g00965	486	Pfam	CDC6, C terminal winged helix domain	396	474	IPR015163	-
	Trre5g00965	486	CDD	Cdc6_C	389	471	IPR015163	-
	Trre5g00965	486	Pfam	AAA domain	114	231	IPR003593	GO:0016887
	Trre5g00965	486	MobiDBLite	consensus disorder prediction	13	38	-	-
	Trre5g00965	486	PANTHER	CELL DIVISION CONTROL PROTEIN 6-RELATED	40	484	-	-
	Trre5g00965	486	PIRSF	Cdc6	2	486	IPR016314	GO:0006270\|GO:0051301
	Trre5g00965	486	MobiDBLite	consensus disorder prediction	1	38	-	-
	Trre5g00965	486	Gene3D	-	264	336	-	-
	Trre5g00965	486	FunFam	Cell division control protein	388	478	-	-
	Trre5g00965	486	FunFam	Cell division control protein	74	259	-	-
	Trre5g00965	486	SUPERFAMILY	"Winged helix" DNA-binding domain	381	484	IPR036390	-
	Trre5g00965	486	SMART	Cdc6_C_2	396	475	IPR015163	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre5g00965	Trre-Chr5	6684992	6689309	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre5g00965	7	485	Core DNA Replication Machinery Family	AT2G29680	59.635	0.0	572

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre5g00965	K02213		-	gmx:100787371	734.176