Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g00961 ATGGAGAATTCATGGGAACAAAGTGTCACATATTCTATCAACACAATCTACCTTCTCTTCTCTGCCTACTTAGTTTTTGTAATGCAACTAGGATTTGCCATGATATGTGCAGGATCTGTCCGTGCCAAAAATGCAATGAACATTATGCTCACAAATGTAGTTGATGCAGTGGTAGGTAGCATTTCTTTCTACCTTTTTGGTTTTGCATTTGCATATGGAAATTCCAACCCTTTCATTGGTACAAATTTGTTTGCTTTAGCTAACATTCCAAATGAAAATTATGACTATGGATTCTTCCTTTACCAATGGGCTTTTGCTATAGCTGTAGCTGGCATCACTAGTGGGTCTATAGCTGAGAGAACCCAATTTAGTGCTTATCTTGTTTTTTCATTTTTCCTTACTGGGTTTGTGTACCCAATTGTGGCCCATTGGGTTTGGTCATCTAGTGGTTGGCTTAGTCCCAATTCAACTGACTTGTTCTTAGGCTCAGGTTCCATTGACTTTGCTGGGAGTGGAGTGGTGCATTTGGTTGGTGCAATTGCTGGACTATGGGGATCTGTCATAGAAGGCCCACGCGTCGGGAGGTTTGATGCTTATGGAAAGCCTGTACCTTTCCGCGGCCACAACGCTGCACTTGTGGTTCTTGGGACCTTCTTATTGTGGTTCGGTTGGTTTGGGTTTAACCCTGGTTCTTTTGACCGAATTCTCGTACCCTACCCTGGCACACCTGATGAAGGTAATTGGACTTCGGTGGGCCGGACTGCCGTGACAACCACATTGGCAGGCTCAACAGCTGGAATTGTCACGTTGTTCGGCCGTCGATTATTGATTGGCCACTGGGATGCAATGGATGTGTGCAATGGTTTAATAGGTGGGTTTGTTGCCATCACGTCTGGGTGCTCAGTTGTTGAGCCATGGGCCACTATTCTATGTGGATTCGTCTCGGCTTGGGTGTTAATTGGGCTCAACATCTTGGCACTAAAATTGAACTATGATGACCCATTAGAGGCAGCTCAATTGCATGGTGGATGTGGCACTTGGGGTTTGTTGTTTACAGGGTTGTTCGCCAAAAAGAAGTTTGTGAATCAAACCTATAATTCAGGTGTGGCAGTGGAAAGACCTTATGGACTTCTACTTGGAGGTGGATGGGGATTGATTGGAGCTCAAATAGTTGAGATTTTGGTAATCTTTGTATTTGTTAGTATAACAATGGGCCCTATGTTCTATGCCTTGCACAAGCTTAATTTACTAAGAATTCCTGTGCATGATGAACTTGCTGGCCTTGATATATCAAGCCATGGAGGCTATGCTTATGCTCCTCAAGAGGAAAATCATCCTCAATCATATGGAGATTATATGCGTATGCAGGAAGACCAATCATAG 1383 0.4375 MENSWEQSVTYSINTIYLLFSAYLVFVMQLGFAMICAGSVRAKNAMNIMLTNVVDAVVGSISFYLFGFAFAYGNSNPFIGTNLFALANIPNENYDYGFFLYQWAFAIAVAGITSGSIAERTQFSAYLVFSFFLTGFVYPIVAHWVWSSSGWLSPNSTDLFLGSGSIDFAGSGVVHLVGAIAGLWGSVIEGPRVGRFDAYGKPVPFRGHNAALVVLGTFLLWFGWFGFNPGSFDRILVPYPGTPDEGNWTSVGRTAVTTTLAGSTAGIVTLFGRRLLIGHWDAMDVCNGLIGGFVAITSGCSVVEPWATILCGFVSAWVLIGLNILALKLNYDDPLEAAQLHGGCGTWGLLFTGLFAKKKFVNQTYNSGVAVERPYGLLLGGGWGLIGAQIVEILVIFVFVSITMGPMFYALHKLNLLRIPVHDELAGLDISSHGGYAYAPQEENHPQSYGDYMRMQEDQS 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g00961 460 FunFam Ammonium transporter 1 452 - -
Trre5g00961 460 PANTHER AMMONIUM TRANSPORTER 10 440 - -
Trre5g00961 460 Pfam Ammonium Transporter Family 18 438 IPR024041 GO:0008519|GO:0016020|GO:0072488
Trre5g00961 460 SUPERFAMILY Ammonium transporter 11 419 - -
Trre5g00961 460 Gene3D Ammonium transporter AmtB like domains 1 454 IPR029020 -
Trre5g00961 460 ProSitePatterns Ammonium transporters signature. 167 192 IPR018047 GO:0008519|GO:0016020|GO:0072488
Trre5g00961 460 NCBIfam ammonium transporter 14 438 IPR001905 GO:0008519|GO:0016020|GO:0072488
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g00961 Trre-Chr5 6652074 6653456 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g00961 7 444 Inorganic Solute Cotransporters AT1G64780 66.742 0.0 604
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g00961 K03320 - pvy:116129597 776.933