Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g00960 ATGGGAAAAAGTTCGTTTCAAGAATCTCTTAAAGCTCTAGAAGCTGATATTCAATATGCTAATACACTGGCATTAAGCCATCCAAGGGATAAAGAAGAAGGATGCTTTCAGATGAGGCTATCATACAGTCCAGTTGCTCCAATTTTTCTCTCACTTGTTCAATGGACAGATTACCGCCTTGCCGGTGCTCTTGGTTTGCTCAGAATTTTAGTTTATGTGACATATGGAAATGGGAAGACTACTATTTCAATATATGAAAGGAAAGCAAGCATAAGACAATTTTATTCGGTTATATTTCCTGCTCTATTGCAACTTCAAATGGGCATCACAGATTTGGATGAAAGGAAACAGAAAGAAGAATATGCTATTAGATACCAAAAGAAGAGTGATTTCAAAGATAGGAAAGAATCTGAAATTGACATTGAAAGAGAACAGGAATGTGGAGTTTGTTTGGAGGTGAAAACAAAAGTTGTTCTGCCTAATTGTTGCCACCAAATGTGTTTCAACTGTTACAAAGACTGGTGTCTTAGGTCTCAGTCTTGCCCCTTTTGCCGGGATAGCTTGAAGAGAGTAAACTCTGGGGACCTTTGGATTTACACAGACACAAGTGATATTGTTGATGTTGGGACAATTTTCAAAGAGAATTGTAAGATTTTGTTTCTTTACATAGAAAAATTGCCTCTTATTATTCCAGACCCTAGACATGTATCCTATGATCCATTTTTTAGATAA 732 0.3661 MGKSSFQESLKALEADIQYANTLALSHPRDKEEGCFQMRLSYSPVAPIFLSLVQWTDYRLAGALGLLRILVYVTYGNGKTTISIYERKASIRQFYSVIFPALLQLQMGITDLDERKQKEEYAIRYQKKSDFKDRKESEIDIEREQECGVCLEVKTKVVLPNCCHQMCFNCYKDWCLRSQSCPFCRDSLKRVNSGDLWIYTDTSDIVDVGTIFKENCKILFLYIEKLPLIIPDPRHVSYDPFFR 243
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Trre5g00960 243 FunFam RING/U-box superfamily protein 125 194 - -
Trre5g00960 243 SMART ring_2 147 184 IPR001841 -
Trre5g00960 243 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 111 194 IPR013083 -
Trre5g00960 243 ProSiteProfiles Zinc finger RING-type profile. 147 185 IPR001841 -
Trre5g00960 243 SUPERFAMILY RING/U-box 133 190 - -
Trre5g00960 243 ProSitePatterns Zinc finger RING-type signature. 162 171 IPR017907 -
Trre5g00960 243 Pfam Zinc finger, C3HC4 type (RING finger) 144 190 - -
Trre5g00960 243 PANTHER RING FINGER PROTEIN 41, 151 4 235 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Trre5g00960 Trre-Chr5 6648565 6651078 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g00960 119 188 C3H Transcription Factor Family AT1G04360 35.065 6.30e-06 44.7
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g00960 - - gmx:100808567 428.713