Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g00955 ATGGCTAAAACGACGTCGTTACTTCTCTGTGCACTCTTTCTCTTTGGAACTCTATCCCTTATTCAGGCAAAGAAGTCGAAGGAGGATTTGAAGGAAGTGACTAACAAAGTTTACTTTGATGTTGAGATTGATGGAAAGGCTGCAGGTCGTATTGTAATTGGTCTTTTTGGGAAGGCAGTTCCAAAAACTGCAGAAAACTTCCGAGCTCTTTGCACAGGTGAAAAGGGGACTGGTAAAAATGGAAAGCCTCTTCATTACAAAGGTAGCTCATTCCATAGGATTATACCTAGCTTTATGATCCAAGGTGGTGATTTTACACAAGGCAATGGTATGGGTGGAGAATCAATTTACGGAGAGAAGTTTAAAGATGAGAACTTCAAGTTAAAGCATACCGGACCAGGAATTTTATCAATGGCAAATGCTGGTCCTGATACCAATGGTTCACAATTTTTCATTACAACTGTGACAACTAGCTGGTTGGATGGAAGGCATGTTGTTTTCGGCAAGGTGCTTTCAGGAATGGATGTTGTTTACAAGGTTGAAGCTGAAGGAAACCAAAGTGGAACTCCCAAGAGCAAGGTTGTGATTGCTGATAGTGGTGAACTACCTCTATAA 615 0.4114 MAKTTSLLLCALFLFGTLSLIQAKKSKEDLKEVTNKVYFDVEIDGKAAGRIVIGLFGKAVPKTAENFRALCTGEKGTGKNGKPLHYKGSSFHRIIPSFMIQGGDFTQGNGMGGESIYGEKFKDENFKLKHTGPGILSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGNQSGTPKSKVVIADSGELPL 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g00955 204 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 162 177 IPR002130 GO:0000413|GO:0003755
Trre5g00955 204 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 134 149 IPR002130 GO:0000413|GO:0003755
Trre5g00955 204 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 91 103 IPR002130 GO:0000413|GO:0003755
Trre5g00955 204 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 55 70 IPR002130 GO:0000413|GO:0003755
Trre5g00955 204 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 149 161 IPR002130 GO:0000413|GO:0003755
Trre5g00955 204 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 86 103 IPR020892 GO:0003755|GO:0006457
Trre5g00955 204 Gene3D - 22 203 IPR029000 -
Trre5g00955 204 PIRSF Peptidylpro_ismrse 21 203 IPR024936 GO:0003755
Trre5g00955 204 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 36 202 - -
Trre5g00955 204 CDD cyclophilin_ABH_like 36 200 - -
Trre5g00955 204 SUPERFAMILY Cyclophilin-like 33 202 IPR029000 -
Trre5g00955 204 FunFam Peptidyl-prolyl cis-trans isomerase 30 203 - -
Trre5g00955 204 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 38 201 IPR002130 GO:0000413|GO:0003755
Trre5g00955 204 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 39 199 IPR002130 GO:0000413|GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g00955 Trre-Chr5 6611485 6613769 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g00955 49 199 U-box Gene Family AT5G67530 43.791 8.99e-30 113
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g00955 K01802 - gmx:100305485 376.711
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g00955 5 6611485 6613769 Trre5g00955 5 6611485 6613769 ECH