Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g00950 ATGAAACCAACAATAACTCTCATTTTCATCTTCACAGTTATTTTCACCATAACAACCGTAAACAGCCTCGGCATCGCTTCCACAACCGCCATAACCTACAACACCTCCACCATATGCGGCATAGTCGCCGGTAAGCCCTATCAATACATCCAATGCTACCAAAACAAAAAACTCATTCCACTAATCCTTCCCAACGTTTCCTTTCAGTCCATTTCTGGTGGCCGCAGTTTCTTCTGCGGCCTCCGTTCTAATGGACTGAGTTTCTACTGTTGGGATACAAGGACACCAAAGTCTTTGCTCAAACCAAGAAGATTGTATCACAGTGAAAATGTTCAGTTGAGTGATGTAGCTGTTGGTGATGATCAAGTTTGTGCTAGAGAGTTGCATTCTGGTGTAGTAAGGTGTTGGAGAGGCTATGGTGGAAATAATGGAGTTGAGTTTCCTTCTCCTGATGAAAGTTTTCGGTTTCGAACTGTTACTTGTGGTTATGGTTTTTGTTGTGGGATATTGAAGGTGAATAATAGAGTTTTTTGTTGGGGTGAAAATGGTGTTGAAAATTTGATTCAGAAACAGTTTGAGAATTTATCAATGTCAACATTGGTTTCTGGTGTGTCACATGTTTGTGGTTTGAATCTTAATGGTGTTTTGGTTTGTAAAGGGAAAAACAACAACAATGATTATTCTGGTAAGTTTAATGTTCCTTTGAATTCTGGTTCTGTTTTTTCAGGTCTTGCTTTAGGTGAAAATTTCACTTGTGGTATTAGTATAAAAAATGGATTTGTTCAATGTTGGGGTGGTGATTTTGATACTGATAATGTTGTCAATGATCATGTGATGAAAGGTGTTTCTTTTGAGTCAATTGTTGCTGGTTTAGATTTTGTTTGTGGTTTGACAACTAAGAATTTGTCTCTAATTTGTTGGGGTAATCCTAATTGGTATTCTAAACCTCATTTGAAGAATGATGTTTATGTTCCATTGGGTATGATTCTTCCTGGTCCATGTGTTAAGGATGATTCTTGTAGCTTTTGTGGTATGTATCCAAATTCTGATTTTCTTTGTCATGGATTTGGAAATATTTGTTATCAATGTCGAACCGAGCAATTTCCGTTAGCCGTGCAATTTCCACCACCAATATCATCATCACCTAATAAACAACCTTCTTTGGATAATGAAGAAAAAGGATCAAGGGGTTGGAAACTTATGACATTTCTGATTATTGGATCAGTTGGTGCTTTTGCTGGTTTATGCACTATTCTTTATTTTGTTATGATTGGTGCTAGAAGATTGTTAAAGGCGAAACTCGATAATTCGGTTCATGCTAGTAGTGAATGTGAATCTGATGATGCTTATGTTGATATAGCTCCAATGCAAAATATTGGTACTATTAATAATAATGGAACATCAACATTAAGATCTTTTTCTAGTAAAAGACATAGTTCAAGTAGATTAAGAAGTGGTTCATCTTCAAAGCAATTAGACAGAACTGAGAGTTTCTCATTTTGGGAATTAGTTGCAGCTAGTGACAATTTCTCATTGGAAAACAAAATCGGTTCCGGTAGTTTCGGGGTTTCCGATTTCGGATTATCGTTGATCTGGCAAGAAACCGAACAAGAATTGATGTCGAATATAAAAGCGGTCGGAACGGTTGGTTATATAGATCCCGAGTACTATGTTTCGAATGTTTTAACAACAAAAAGTGATGTTTATGGTTTAGGTGTTGTGATGTTGGAACTTTTGACAGGTAAAAAAGCAGTGTTTAAGAATGAAGATGGATCAGGTCCTATTGGTGTGGTGGAATATACAGGAGGAAAGATAGGAACAGGTGAGGTGTGGAATTTGTTGGATCATAGAGTTGGAATACCAGAAGTGAATGAAGTTGAATCTGTTGAGATTATGGCTTATACTGCTATGCATTGTGTTAATTTGGAGGGTAAAGATAGGCCTAATATGGTTGATATTGTTGCTAATTTGGAAAGGGCTTTGGCTTTTCTTGAGGGTAGTCCTGGTAGTTTTTCTATGTCATCATTTTCTACCAATCTTCCATGA 2046 0.3695 MKPTITLIFIFTVIFTITTVNSLGIASTTAITYNTSTICGIVAGKPYQYIQCYQNKKLIPLILPNVSFQSISGGRSFFCGLRSNGLSFYCWDTRTPKSLLKPRRLYHSENVQLSDVAVGDDQVCARELHSGVVRCWRGYGGNNGVEFPSPDESFRFRTVTCGYGFCCGILKVNNRVFCWGENGVENLIQKQFENLSMSTLVSGVSHVCGLNLNGVLVCKGKNNNNDYSGKFNVPLNSGSVFSGLALGENFTCGISIKNGFVQCWGGDFDTDNVVNDHVMKGVSFESIVAGLDFVCGLTTKNLSLICWGNPNWYSKPHLKNDVYVPLGMILPGPCVKDDSCSFCGMYPNSDFLCHGFGNICYQCRTEQFPLAVQFPPPISSSPNKQPSLDNEEKGSRGWKLMTFLIIGSVGAFAGLCTILYFVMIGARRLLKAKLDNSVHASSECESDDAYVDIAPMQNIGTINNNGTSTLRSFSSKRHSSSRLRSGSSSKQLDRTESFSFWELVAASDNFSLENKIGSGSFGVSDFGLSLIWQETEQELMSNIKAVGTVGYIDPEYYVSNVLTTKSDVYGLGVVMLELLTGKKAVFKNEDGSGPIGVVEYTGGKIGTGEVWNLLDHRVGIPEVNEVESVEIMAYTAMHCVNLEGKDRPNMVDIVANLERALAFLEGSPGSFSMSSFSTNLP 681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g00950 681 Gene3D - 58 322 IPR009091 -
Trre5g00950 681 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN CCR4 193 523 IPR044815 GO:0004674
Trre5g00950 681 SUPERFAMILY RCC1/BLIP-II 59 311 IPR009091 -
Trre5g00950 681 Pfam Protein kinase domain 520 590 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g00950 681 Gene3D Transferase(Phosphotransferase) domain 1 506 666 - -
Trre5g00950 681 SUPERFAMILY Protein kinase-like (PK-like) 523 661 IPR011009 -
Trre5g00950 681 ProSiteProfiles Protein kinase domain profile. 346 664 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g00950 Trre-Chr5 6581371 6583830 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g00950 523 672 Receptor kinase-like Gene Family AT3G55950 55.975 1.00e-36 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Trre5g00950 Pkinase 3.7e-09 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g00950 - - gmx:100776682 528.48