Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g00949 ATGAAACCAACAATAACTCTCATTTTCATCTTCACAGTTATTTTCACCATAACAACCGTAAACAGCCTCGGCATCGCTTCCACAACCGCCATAACCTACAACACCTCCACCATATGCGGCATAGTCGCCGGTAAGCCCTATCAATACATCCAATGCTACCAAAACAAAAAACTCATTCCACTAATCCTTCCCAACGTTTCCTTTCAGTCCATTTCTGGTGGCCGCAGTTTCTTCTGCGGCCTCCGTTCTAATGGACTGAGTTTCTACTGTTGGGATACAAGGACACCAAAGTCTTTGCTCAAACCAAGAAGATTGTATCACAGTGAAAATGTTCAGTTGAGTGATGTAGCTGTTGGTGATGATCAAGTTTGTGCTAGAGAGTTGCATTCTGGTGTAGTAAGGTGTTGGAGAGGCTATGGTGGAAATAATGGAGTTGAGTTTCCTTCTCCTGATGAAAGTTTTCGGTTTCGAACTGTTACTTGTGGTTATGGTTTTTGTTGTGGGATATTGAAGGTGAATAATAGAGTTTTTTGTTGGGGTGAAAATGGTGTTGAAAATTTGATTCAGAAACAGTTTGAGAATTTATCAATGTCAACATTGGTTTCTGGTGTGTCACATGTTTGTGGTTTGAATCTTAATGGTGTTTTGGTTTGTAAAGGGAAAAACAACAACAATGATTATTCTGGTAAGTTTAATGTTCCTTTGAATTCTGGTTCTGTTTTTTCAGGTCTTGCTTTAGGTGAAAATTTCACTTGTGGTATTAGTATAAAAAATGGATTTGTTCAATGTTGGGGTGGTGATTTTGATACTGATAATGTTGTCAATGATCATGTGATGAAAGGTGTTTCTTTTGAGTCAATTGTTGCTGGTTTAGATTTTGTTTGTGGTTTGACAACTAAGAATTTGTCTCTAATTTGTTGGGGTAATCCTAATTGGTATTCTAAACCTCATTTGAAGAATGATGTTTATGTTCCATTGGGTATGATTCTTCCTGGTCCATGTGTTAAGGATGATTCTTGTAGCTTTTGTGGTATGTATCCAAATTCTGATTTTCTTTGTCATGGATTTGGAAATATTTGTTATCAATGTCGAACCGAGCAATTTCCGTTAGCCGTGCAATTTCCACCACCAATATCATCATCACCTAATAAACAACCTTCTTTGGATAATGAAGAAAAAGGATCAAGGGGTTGGAAACTTATGACATTTCTGATTATTGGATCAGTTGGTGCTTTTGCTGGTTTATGCACTATTCTTTATTTTGTTATGATTGGTGCTAGAAGATTGTTAAAGGCGAAACTCGATAATTCGGTTCATGCTAGTAGTGAATGTGAATCTGATGATGCTTATGTTGATATAGCTCCAATGCAAAATATTGGTACTATTAATAATAATGGAACATCAACATTAAGATCTTTTTCTAGTAAAAGACATAGTTCAAGTAGATTAAGAAGTGGTTCATCTTCAAAGCAATTAGACAGAACTGAGAGTTTCTCATTTTGGGAATTAGTTGCAGCTAGTGACAATTTCTCATTGGAAAACAAAATCGGTTCCGGTAGTTTCGGGTGTGTTTACAAAGCGAGACTAATCGACGGCCGTCAAGTTGCAATTAAACGAGGCGATACATGCGCGAGGAAGAAGAAATTTCAAGAAAAAGAAACTGCTTTTGATTCTGAGTTAACTTTATTGTCAAGGCTTCATCATAAGCATTTGGTGAGACTAATTGGTTTCTGTGAAGAGAATGATGAGAGACTTTTGGTTTATGAGTATATGAGTAATGGATCATTACATGATCATTTGCATGATAAGAACAATGTTGAGAAAAATAGTAGTATTATGAATTCATGGAAAATGAGAATCAAAGTTGCTTTAGATGCTGCAAGAGGGATTGAGTATCTTCATAACTACGCGGTGCCGCTGATTATTCATAGAGATATTAAATCATCAAATATACTTATTGACTCAAATTGGAATGCTAGGGTTTCCGATTTCGGATTATCGTTGATCTGGCAAGAAACCGAACAAGAATTGATGTCGAATATAAAAGCGGTCGGAACGGTTGGTTATATAGATCCCGAGTACTATGTTTCGAATGTTTTAACAACAAAAAGTGATGTTTATGGTTTAGGTGTTGTGATGTTGGAACTTTTGACAGGTAAAAAAGCAGTGTTTAAGAATGAAGATGGATCAGGTCCTATTGGTGTGGTGGAATATACAGGAGGAAAGATAGGAACAGGTGAGGTGTGGAATTTGTTGGATCATAGAGTTGGAATACCAGAAGTGAATGAAGTTGAATCTGTTGAGATTATGGCTTATACTGCTATGCATTGTGTTAATTTGGAGGGTAAAGATAGGCCTAATATGGTTGATATTGTTGCTAATTTGGAAAGGGCTTTGGCTTTTCTTGAGGGTAGTCCTGGTAGTTTTTCTATGTCATCATTTTCTACCAATCTTCCATGA 2460 0.3663 MKPTITLIFIFTVIFTITTVNSLGIASTTAITYNTSTICGIVAGKPYQYIQCYQNKKLIPLILPNVSFQSISGGRSFFCGLRSNGLSFYCWDTRTPKSLLKPRRLYHSENVQLSDVAVGDDQVCARELHSGVVRCWRGYGGNNGVEFPSPDESFRFRTVTCGYGFCCGILKVNNRVFCWGENGVENLIQKQFENLSMSTLVSGVSHVCGLNLNGVLVCKGKNNNNDYSGKFNVPLNSGSVFSGLALGENFTCGISIKNGFVQCWGGDFDTDNVVNDHVMKGVSFESIVAGLDFVCGLTTKNLSLICWGNPNWYSKPHLKNDVYVPLGMILPGPCVKDDSCSFCGMYPNSDFLCHGFGNICYQCRTEQFPLAVQFPPPISSSPNKQPSLDNEEKGSRGWKLMTFLIIGSVGAFAGLCTILYFVMIGARRLLKAKLDNSVHASSECESDDAYVDIAPMQNIGTINNNGTSTLRSFSSKRHSSSRLRSGSSSKQLDRTESFSFWELVAASDNFSLENKIGSGSFGCVYKARLIDGRQVAIKRGDTCARKKKFQEKETAFDSELTLLSRLHHKHLVRLIGFCEENDERLLVYEYMSNGSLHDHLHDKNNVEKNSSIMNSWKMRIKVALDAARGIEYLHNYAVPLIIHRDIKSSNILIDSNWNARVSDFGLSLIWQETEQELMSNIKAVGTVGYIDPEYYVSNVLTTKSDVYGLGVVMLELLTGKKAVFKNEDGSGPIGVVEYTGGKIGTGEVWNLLDHRVGIPEVNEVESVEIMAYTAMHCVNLEGKDRPNMVDIVANLERALAFLEGSPGSFSMSSFSTNLP 819
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g00949 819 SMART serkin_6 510 802 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g00949 819 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN CCR4 194 805 IPR044815 GO:0004674
Trre5g00949 819 Gene3D - 58 322 IPR009091 -
Trre5g00949 819 Gene3D Transferase(Phosphotransferase) domain 1 591 803 - -
Trre5g00949 819 ProSitePatterns Serine/Threonine protein kinases active-site signature. 641 653 IPR008271 GO:0004672|GO:0006468
Trre5g00949 819 ProSitePatterns Protein kinases ATP-binding region signature. 516 546 IPR017441 GO:0005524
Trre5g00949 819 FunFam receptor-like protein kinase FERONIA 472 590 - -
Trre5g00949 819 CDD STKc_IRAK 516 797 - -
Trre5g00949 819 SUPERFAMILY RCC1/BLIP-II 59 311 IPR009091 -
Trre5g00949 819 Pfam Protein kinase domain 511 728 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g00949 819 Gene3D Phosphorylase Kinase; domain 1 482 590 - -
Trre5g00949 819 ProSiteProfiles Protein kinase domain profile. 510 802 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g00949 819 SUPERFAMILY Protein kinase-like (PK-like) 486 795 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g00949 Trre-Chr5 6581371 6583830 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g00949 4 810 Receptor kinase-like Gene Family AT3G55950 49.396 0.0 686
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Trre5g00949 Pkinase 4e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g00949 - - gmx:100776682 1011.91