Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g00946 ATGTGCAACGGTTCGAATATAAAGCCTTCTCAAACTGATTTGATTAGGGAACATGAATATGGAAGAGAAGAAGAACTTGATCATAAGATTTCTGCATTGCTTGAGTTTTCAGCCAAAGATGATGTAATAGCTTTCAAAGATGTTGTTGAAAAAGACGGTTGTGATGTCGATGAGGTAGGGTTATGGTATGGAAGGAGGGTTGGCTCAAAGGAAATGAGTTATGAAGAAAGGACTCCTCTTATGATTGCTGCCTTATTTGGAAGCAAGGGTGTATTGTGTTATATTCTCGAAACCGGCCGTGCTGATGTTAACCGAGCGTGTGGTTCAGATGGTGCTACTGCTCTTCATTGTGCTGTTTTTGGTTGTTCTGTTGCTTCTGCTGAGGTTATAAAGCTTTTGCTCGATGCATCTGCAGATGTTAGTTCTGTTGATGCGAACGGTAACCGGTGTAGTGATTTGATTGTTTCGGTTTCTAATAGTATCCCCGGTTCAAGGAAGAGGATACTAGCCATACTAGAAGGTGAAGATGGCGTTGATTATGACGCCGGCGATTGTCTTAAGGAAGTAGGTTTCCAAATGGGGAAGCTGCAACAAGATTTAGGTTCACCTCGAATCGAGAAGAAAGATTATCCGGTTGATCCATCCCTACCGGGCATAAAGAATGCGATATATAGTACAGATGAATTTAGGATGTTTACATTTAAAGTCAAGCCTTGCTCAAGGGCTTATTCTCATGATTGGACCGAGTGCCCCTTTGCTCATCCTGGGGAAAATGCAAGGCGCCGTGATCCGAGGAAATATCATTACACCTGTGTCCCTTGTCCCGAATTTCGGAAGGGATCATGTAGTAAAGGGGATGCTTGTGAATATGCACATGGTATTTTTGAGAGCTGGCTTCATCCTGCTCAATATAGAACGAGGCTTTGCAAAGATGAAACTGAATGCACAAGAAGGGTTTGTTTCTTTGCTCACAAACTCGAAGAGCTTCGTCCGGTGTACGCTTCTACTGGTTCTGCTTTGCCTTCACCTACTTCATATTCAACTTCACCTAGTGCTTCTTCAATGGATTCTTTCACACTGAACTCTCCATCTGCGGCGATGCCACCTCTGACTCCATCTGCAGTGTCTTCTCCTTCATGCGGAACCATGTGGCCGACTCAGTCTCATGTTGCAATCCCTACACTTCAGATGCCGAGAAGAAGAATGAATACTGCACATAATGCTAGAGATAATATTGAATTGCTCGAACTTGAAAACTGTCTTATGCGGAAGCTAATGATTGAAGAGATGACAGGTCTTTCATCCCCTTCAAATAGGTATTCAGGAGTGAATCTTACTAACCTTGATGACATTTTCGGGTCGCCGAGACAATCTCCAACATCAATGCATCAGAATGTGAACCAGCAACTATGGGGCTATCCTTCTGACATTACCAATATAATTGGATCACCACAAGTTAGAGCTGATCCATCTATGAATTCAAGATATGATGCCTTTTCGAAGCGGAGCCATAGCTTTATTGAGCGGAGCAGCACGACGAGCTTTAATCCTGAGCTTCCTTCTACTACATCAATCACTGCGGCGCCTTCAAACTTCTCTGGTTGGGGCTCTCCAGATGGAAAATTAGACTGGTCTATTCGTGGCGATGAACTCAACAAAATGAGGAAATCATATTCTTTCGTCTTTCGAAACACAAATAGCTTTTCAACAATGGATGCACCAAATGTTGATAATCCAGATGTATTGTCAAGCCAAGAAACATGGGTTAATTCACTGGTGGAGGATGCTCCTCCAACATTGGAATCTGATCAATACTGTGTTGAAGATGATCAACAATGCCATAATCAAGACATGGTTCTCTCTTTGCCGGAGCAATTGTACATGGACCATGAGCAAACAGTGATGTGA 1908 0.4292 MCNGSNIKPSQTDLIREHEYGREEELDHKISALLEFSAKDDVIAFKDVVEKDGCDVDEVGLWYGRRVGSKEMSYEERTPLMIAALFGSKGVLCYILETGRADVNRACGSDGATALHCAVFGCSVASAEVIKLLLDASADVSSVDANGNRCSDLIVSVSNSIPGSRKRILAILEGEDGVDYDAGDCLKEVGFQMGKLQQDLGSPRIEKKDYPVDPSLPGIKNAIYSTDEFRMFTFKVKPCSRAYSHDWTECPFAHPGENARRRDPRKYHYTCVPCPEFRKGSCSKGDACEYAHGIFESWLHPAQYRTRLCKDETECTRRVCFFAHKLEELRPVYASTGSALPSPTSYSTSPSASSMDSFTLNSPSAAMPPLTPSAVSSPSCGTMWPTQSHVAIPTLQMPRRRMNTAHNARDNIELLELENCLMRKLMIEEMTGLSSPSNRYSGVNLTNLDDIFGSPRQSPTSMHQNVNQQLWGYPSDITNIIGSPQVRADPSMNSRYDAFSKRSHSFIERSSTTSFNPELPSTTSITAAPSNFSGWGSPDGKLDWSIRGDELNKMRKSYSFVFRNTNSFSTMDAPNVDNPDVLSSQETWVNSLVEDAPPTLESDQYCVEDDQQCHNQDMVLSLPEQLYMDHEQTVM 635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g00946 635 ProSiteProfiles Zinc finger C3H1-type profile. 273 295 IPR000571 GO:0046872
Trre5g00946 635 ProSiteProfiles Ankyrin repeat region circular profile. 110 144 - -
Trre5g00946 635 SUPERFAMILY Ankyrin repeat 26 156 IPR036770 -
Trre5g00946 635 ProSiteProfiles Ankyrin repeat profile. 110 145 IPR002110 GO:0005515
Trre5g00946 635 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 273 293 IPR000571 GO:0046872
Trre5g00946 635 SMART ANK_2a 110 142 IPR002110 GO:0005515
Trre5g00946 635 SMART ANK_2a 75 105 IPR002110 GO:0005515
Trre5g00946 635 FunFam Zinc finger CCCH domain-containing protein 66 226 294 - -
Trre5g00946 635 MobiDBLite consensus disorder prediction 337 359 - -
Trre5g00946 635 Pfam Ankyrin repeats (3 copies) 68 142 IPR002110 GO:0005515
Trre5g00946 635 PANTHER UNKEMPT FAMILY MEMBER 35 595 IPR045234 -
Trre5g00946 635 SMART c3hfinal6 268 294 IPR000571 GO:0046872
Trre5g00946 635 SMART c3hfinal6 303 326 IPR000571 GO:0046872
Trre5g00946 635 Gene3D - 270 331 - -
Trre5g00946 635 Gene3D - 26 167 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g00946 Trre-Chr5 6525190 6527097 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g00946 25 561 C2H2 Transcription Factor Family AT5G12850 43.044 7.39e-140 422
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Trre5g00946 Ank_2 1.4e-06 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g00946 - - mtr:11423139 813.142