Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g00945 ATGTCTTTGAGTGTTGCTAATCGTAGTGAATTTTCAAACATTTCTGAAATCAATTCTGATAAGGCAGCATGGGATGTTAAGGTTAAAATCATTAGGCTTTGGCAAGTTTCTGATTTTAATCGCAGTGCTTTACCCTTTTCTATTGAAATGGTTTTACTTGATGCAAATGGCGATAGAATTCATGCAACAGTCAAAAAAACTCTGATTTACAAGTTTAAGGACCAGATTTTGGAAGGGAAAATTTATGCTTTGCAAAATGTTGGTGTTTCAAATAATGGTGGTGCTTATCGTATTACTCGCCATCCTTATAAGATGAATTTTCTATTTAACACTTTTGTTCAAAGAATTTCTAATTTTGACATTTCAAAATCTCCATTTCACTTTGTTCCAATCTCTGAAATTGTTGGTGGATCTTATGACACTGATTATCTATGTGATGTAATGGGAGTATTGACTGGTGTTGGCCAAGAGCGTGAAGTCACAAATCAGAATGGAAGCACAACAAAGCTGAATGTCATTGCCTTGGAGGCAAATGGGAGCAAGATACAGTGCACATTATTTGGAAATTATGTTGATGAGCTGAATGCATTCCTTGGTGCTGGAGATTGTAACAATGCTGTTGTTATATTGCAGTTTGCAAAGGCTAAAAATTTTCAAGATAAAATCCACATTCAAAACTGCATGAACTGCAGTTTGTTGATTTTTAACTCCAGCTGTGCAGAAAGTGTTGCATTCAAGTCAAGCTTAGCTGAAAATGTTGATACTCCTTCTCCTCTTGCTTTAACCCAAATTGGATGTGAATCAAGGATTGAGCCCATTGATGAGTTTTTGCACAACACCCGTAGGATTACCTTGCAATGTCTTAGAGATGCTGGATCTGAAGGTTTTCATGTTGTAGCTGCTACAATCAAAAAGGTTTTAAACCCTGACAGTTTTTGGTACACAGCTTGTGTGTGCAATAAGGCTGTTATCCCAGACTCAAAAATGTTTTATTGTGAAAAGTGCAACAAGCATGTTATGAGGGTGTTTCCTAGGTTTTGTATCAAGGTTAGAGTTATGGACAATACTGACTCTGCTATATTTGGGTGCATAGCATGA 1098 0.3652 MSLSVANRSEFSNISEINSDKAAWDVKVKIIRLWQVSDFNRSALPFSIEMVLLDANGDRIHATVKKTLIYKFKDQILEGKIYALQNVGVSNNGGAYRITRHPYKMNFLFNTFVQRISNFDISKSPFHFVPISEIVGGSYDTDYLCDVMGVLTGVGQEREVTNQNGSTTKLNVIALEANGSKIQCTLFGNYVDELNAFLGAGDCNNAVVILQFAKAKNFQDKIHIQNCMNCSLLIFNSSCAESVAFKSSLAENVDTPSPLALTQIGCESRIEPIDEFLHNTRRITLQCLRDAGSEGFHVVAATIKKVLNPDSFWYTACVCNKAVIPDSKMFYCEKCNKHVMRVFPRFCIKVRVMDNTDSAIFGCIA 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g00945 365 Gene3D - 274 364 IPR012340 -
Trre5g00945 365 Pfam Replication factor-A C terminal domain 298 360 IPR013955 -
Trre5g00945 365 CDD RPA1_DBD_B_like 146 249 - -
Trre5g00945 365 Gene3D - 119 256 IPR012340 -
Trre5g00945 365 CDD RPA1_DBD_A_like 26 113 - -
Trre5g00945 365 Pfam Domain of unknown function DUF223 49 144 IPR003871 -
Trre5g00945 365 SUPERFAMILY Nucleic acid-binding proteins 292 361 IPR012340 -
Trre5g00945 365 SUPERFAMILY Nucleic acid-binding proteins 10 119 IPR012340 -
Trre5g00945 365 SUPERFAMILY Nucleic acid-binding proteins 126 252 IPR012340 -
Trre5g00945 365 Gene3D - 9 115 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g00945 Trre-Chr5 6519717 6521381 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g00945 14 356 Core DNA Replication Machinery Family AT2G06510 22.652 8.01e-14 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g00945 - - tpra:123915358 538.495