Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g00935 ATGGAGGGTTTCGATAATTCAAGCTCCCTAAACCCTAAACCTGCTTCCTCGCAACAAAAGCTTCAAATCAGTGAAAGGGTTGAGGTGAGGAGTTTTGAGGAAGGTTTTCTAGGATCATGGCATCCAGGGACAGTTATTCATTGTGAGAAGCTGAGACGTTATGTTAGATATGAGAATATTTTGAATGATGACGGGTTGAGTAATTTTGTTGAAGTAGTGACTGTTTCAAGTGTGTTGGATGGTAATTTCGGAACTCCGAGTAAACGTGGGGTGATTAGGCCACTGCCACATTTGGTTGAGTTTGAGAAATGTGATCTTAAGTATGGTCTGTGTGTAGATGTAAACTATCAGGAAGCTTGGTGGGAAGGTGTTGTATATGATCACTGTGATGGAATGGAGGAGAGGAGTGTGTTTTTCCCTGATCTCGGTGATGAAATGAAGGTCGGAATTCATCAAATGCGGATTACCCAGGATTGGGATGAAGTTACGGAGAAGTGGGAGCAACGAGGGAAATGGTTGTTTCTTGAATTGATTGAGGAGTGTGAGCGGGAATCATATATTCCAGTTTCGGTAAAGCAAATTTGGTATGATGTGAGACAGAAAGAGGAATTTTCTGCAATTGAGGAATGGACTTTGAATGTGAAGAAGGATTTATGGAGAGACATGATAGCGGAGGTAGTTGGTGACTACTTGGCTATTACATTAAGTGAAGTTTTCTCAGCCTTGAATCTTCCAGAGCTGAACTTAGTTGAACTAATATCTAATGTTGATTCAAACGCGACTTTATCTGAAAAGGAAAATTTCGAGCAGAGAGAATCTGTTCTTCCTGTTGAAAAGGACTTACCTGTGTTTCAAAATGAAGTGTCCTGCAACCGCGCTGGTGAAGCAGTTTCGGTTGCTATTGGTTTTGAGAAAAATGAACACGGTTCGCCAACTTATTTAAACTCCAATAGGTGGGAACGCGTGATATTTTCTGAAACTGAATACTGTCCTGATGCTGTTAAGCAATATGCACTTGCTTCCAACGACAAAACGACGATGGCATCTTTGAAGGAAAAAGTATTGAAGCATCTTGCATATCTTGGATGGGAAATTGACGTTGACCGCTGTAATAAACATTACAGGTACAAGCCACCCCCCGGAGACCATTGCAAGAAGAAACTTTACTACTCACTTATTGAACTTTGTAAAGTTATGCAAATGGAATCGATGCATCCTACCAGTGACTGTCTTATTCCAGATGTGCCTCTTAATGCATTGGAAAATATTCAGAACCGAATTGCATCTCCTCTAGTTGCAGACGAACAAGCACCTCCTTCTGTTGCAGCGGCAGATGAGCAAGCTTATTGTCCTCAAGCCATTGTGGAATACCACAAACGTGCATCGGAGGCGAAATGGAAAGATAAAAGTGAAGTTAGATCAAAAGTAAAAAGACATCTGTTAGCAGAAGGATGGACTTTAATTGATCCACCTCCAAATAATAGAAGAAGAGGTGTTGTGTACATTTCTCCGCAAAAGCGGAGATTCCACTCACTGATCGCAGTATGTGAATTCTATGTTGAAGAAATTATTCCGAGATTGACTATTTCTGGCATGCAACCTTCAAATAGACCATCACATTTACTTCCTCAGGAGCCTGAGTTACACACTATAGACACTGCTGCTGTGAATAAATCAAGTGCAAATCGAAAGCGAAAACACTTTAGGAATTCGGATGACAGCTCGCCGAAGTGCCAAAGCAATGAATCAACACTAAGGGTGCTGAGATCGAATAAAAGGGTGCGAGAGGCATCTTCCTCTTGTATGTCAAACCAGAAACCTCTAAATGTTCTGTCTTGGTTGATAGACAGCAACGTGGTGTTACCAAGGTCTAAGGTTTACTATCGAGCAAAACGTGGGCAACGTGTTCAGGCTGGGGGGAGAATAACTCATGAAGGAATCAAGTGTATCTGTTGTTCGAGAATATACAGTCTTGTTTCCTTCGAATTTCATGCTACTGGCATTAATACCACCAGACCAAGTGCTAATATATTTCTTGACGATGGTAGGTCGCTCTTATCTTGCCAGATGCAAATAATGCAAGATCACAAGTCAAAGGAGGCTATGGTAAAACCACTCTGTGAATTGCATCAGGGTGAAAACGACTACATTTGTTCCGTTTGCCACTACGGGGGCGAACTTCTGTTGTGCGACCAATGTCCGTCTTCATATCATAACACATGTCTTGGTCTGGAGGATGTTCCTGATGGTGAATGGTTTTGTCCATCATGTATTTGCGGGATTTGTGGACAAAGCAAATTCAACGTGGGTGGTGAGGATGGACATTTCCTTACATGCATGCAGTGTGAACATAAATATCACGTTGCATGCCTGAAAAGTAGAGATACAAGTCAATATGGAAGTTATGTGGAAAGCCGGTTCTGCGGAAAAGACTGCGAAAAGCTATCCGCAGGCCTTCAAAGTCTGCTGGGAGAGCCATTTCCAGTGGGTGCGGACGGTCTAACATGGACAGTGGTTAAGTGTATAGACTCTGAGAGCTGTCATCTTGATAGCAGCAACAATGAATTATGGGCAGAATGTTTCACCAAACTCAATGTTGCTCTATCGGTAATGCATGAGTGCTTCGAGCCTCTAAAAGAATCCGCATCCTGTAGAGATCTGGTGGATGATGTTATATTCAGCAGATGCTCCGAACTTAATCGAATGAATTTCCGGGGTTTCTATACTGTACTTCTGGAGAAAAATGAAGATCTGGTCAGTGTGGCAACTATTAGGGTCCTTGGAGATAAGGTAGCTGAAGTACCTCTTGTTGCTACCAGATTTCATTATCGTCGACATGGAATGTGTCGCATATTAATGGATGAACTGGAAAAGAAACTCACCCAATTAGGAGTGGAGAGGCTCGTTTTGCCTGCTGTTCCCAGTGTGGCAGATACATGGACAGGTTGTTTTGGCTTTTCTAAGATGACAACCTTGGAGCGATCAAAATTTCTGGATTATACTTTCTTGGATTTTCCCGGCACCATCATGTGCCAAAAGCTTTTGAAGATTCCATCTCCAGATTCAGTTTTGCCAATTGAGTTCCAACAAAAACACAATGCTATCTCCGGAAGCAGTAGTGGTGCCAATAAGTCTCCGGTATCTGAAGTTGACCAAGCAGGAGAGACAGGCAAAAAAGAAATGCAGGACCAACAAATGTTGGATATTTTTGAAGGCAATAATGATAATCTTGGCAGTGCTGTTATCGACTGTGTCGCCATGGGGGAGCAACCAAGTCCTGAGGATCAACATTGCCAGGATGGAACCTCCACTTCACGGAGCACTTTTGAAAAATTCAATGGCTTGTGCTACTCTAGAAGAAGGAAGGTGAAATATCATGAGTAG 3384 0.4238 MEGFDNSSSLNPKPASSQQKLQISERVEVRSFEEGFLGSWHPGTVIHCEKLRRYVRYENILNDDGLSNFVEVVTVSSVLDGNFGTPSKRGVIRPLPHLVEFEKCDLKYGLCVDVNYQEAWWEGVVYDHCDGMEERSVFFPDLGDEMKVGIHQMRITQDWDEVTEKWEQRGKWLFLELIEECERESYIPVSVKQIWYDVRQKEEFSAIEEWTLNVKKDLWRDMIAEVVGDYLAITLSEVFSALNLPELNLVELISNVDSNATLSEKENFEQRESVLPVEKDLPVFQNEVSCNRAGEAVSVAIGFEKNEHGSPTYLNSNRWERVIFSETEYCPDAVKQYALASNDKTTMASLKEKVLKHLAYLGWEIDVDRCNKHYRYKPPPGDHCKKKLYYSLIELCKVMQMESMHPTSDCLIPDVPLNALENIQNRIASPLVADEQAPPSVAAADEQAYCPQAIVEYHKRASEAKWKDKSEVRSKVKRHLLAEGWTLIDPPPNNRRRGVVYISPQKRRFHSLIAVCEFYVEEIIPRLTISGMQPSNRPSHLLPQEPELHTIDTAAVNKSSANRKRKHFRNSDDSSPKCQSNESTLRVLRSNKRVREASSSCMSNQKPLNVLSWLIDSNVVLPRSKVYYRAKRGQRVQAGGRITHEGIKCICCSRIYSLVSFEFHATGINTTRPSANIFLDDGRSLLSCQMQIMQDHKSKEAMVKPLCELHQGENDYICSVCHYGGELLLCDQCPSSYHNTCLGLEDVPDGEWFCPSCICGICGQSKFNVGGEDGHFLTCMQCEHKYHVACLKSRDTSQYGSYVESRFCGKDCEKLSAGLQSLLGEPFPVGADGLTWTVVKCIDSESCHLDSSNNELWAECFTKLNVALSVMHECFEPLKESASCRDLVDDVIFSRCSELNRMNFRGFYTVLLEKNEDLVSVATIRVLGDKVAEVPLVATRFHYRRHGMCRILMDELEKKLTQLGVERLVLPAVPSVADTWTGCFGFSKMTTLERSKFLDYTFLDFPGTIMCQKLLKIPSPDSVLPIEFQQKHNAISGSSSGANKSPVSEVDQAGETGKKEMQDQQMLDIFEGNNDNLGSAVIDCVAMGEQPSPEDQHCQDGTSTSRSTFEKFNGLCYSRRRKVKYHE 1127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g00935 1127 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 870 1015 IPR000182 GO:0016747
Trre5g00935 1127 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 760 815 IPR013083 -
Trre5g00935 1127 MobiDBLite consensus disorder prediction 1 22 - -
Trre5g00935 1127 CDD PHD2_CHD_II 718 757 - -
Trre5g00935 1127 CDD NAT_SF 910 970 - -
Trre5g00935 1127 Pfam Agenet domain 25 96 IPR008395 -
Trre5g00935 1127 Pfam Tify domain binding domain 640 691 IPR032308 -
Trre5g00935 1127 PANTHER PHD FINGER PROTEIN 12 449 1071 IPR042163 GO:0003714|GO:0045892
Trre5g00935 1127 SMART agenet_At_2 104 161 IPR014002 -
Trre5g00935 1127 MobiDBLite consensus disorder prediction 1035 1060 - -
Trre5g00935 1127 SUPERFAMILY FYVE/PHD zinc finger 697 758 IPR011011 -
Trre5g00935 1127 ProSiteProfiles Zinc finger PHD-type profile. 715 760 IPR019787 -
Trre5g00935 1127 MobiDBLite consensus disorder prediction 1035 1050 - -
Trre5g00935 1127 MobiDBLite consensus disorder prediction 558 584 - -
Trre5g00935 1127 Gene3D - 880 989 - -
Trre5g00935 1127 SMART PHD_3 759 813 IPR001965 -
Trre5g00935 1127 SMART PHD_3 717 758 IPR001965 -
Trre5g00935 1127 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 900 975 IPR016181 -
Trre5g00935 1127 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 708 759 IPR013083 -
Trre5g00935 1127 Pfam PHD-finger 717 759 IPR019787 -
Trre5g00935 1127 CDD Tudor_Agenet_AtDUF_rpt1_3 25 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g00935 Trre-Chr5 6445185 6451574 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g00935 30 963 PHD Transcription Factor Family AT5G58610 37.810 0.0 592
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Trre5g00935 Agenet 5e-14 CL0049
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g00935 - - cam:101498411 1553.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g00935 5 6445185 6451574 Trre5g00935 5 6445185 6451574 ECH
Trre5g00935 5 6445185 6451574 Trre9g03739 9 45740421 45747382 PCT