Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g00917 ATGCTACAGGAGCTTCCAAATCATCAAAGAGCAGAAGCAGTAAACAGTTTAGTTTATGAAGCAAATGCAAGAGTTAGAGATCCTGTTTATGGATGTGTTGGAGCAATATCATACCTTCAAAGTCAAGTTTCACAATTACAAATGCAACTTGCAGTGGCTCAAGCAGAGATACTCTGCATCCAAATGCAGCAAGAATCTGCTACAGTTACTGACTCATTACCAACACATGTTGACCAAGATGACAAATTTATGCTCCTATCAGAAAATAATAATTGCTATGGAGTCCTTCCACAATATCTCAACTTTCCATCTTCTTCTTCTTCATCTTCCAATGTATTCCAAGATTATGAGCCTCTTAAGAGAGAGACTTTTTGGACTTAA 381 0.3727 MLQELPNHQRAEAVNSLVYEANARVRDPVYGCVGAISYLQSQVSQLQMQLAVAQAEILCIQMQQESATVTDSLPTHVDQDDKFMLLSENNNCYGVLPQYLNFPSSSSSSSNVFQDYEPLKRETFWT 126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g00917 126 Pfam Lateral organ boundaries (LOB) domain 1 54 IPR004883 -
Trre5g00917 126 Coils Coil 36 56 - -
Trre5g00917 126 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 74 - -
Trre5g00917 126 ProSiteProfiles LOB domain profile. 1 57 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g00917 Trre-Chr5 6299936 6301207 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g00917 1 126 AS2 family AT2G30130 57.042 8.99e-41 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Trre5g00917 LOB 1.3e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g00917 - - gmx:100780073 169.474