Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g00916 ATGGGATCAGGTTCCTCACCTTGTGCTTCTTGCAAATTGTTGAGAAGGCGTTGCACACAAGAATGCATCTTTGCCCCTTATTTTCCTTCTGATGATCCACGCAAGTTTGCCATTGTTCATAAGGTCTTTGGTGCTAGCAATATCAGCAAAATGCTACAGGAGCTTCCAAATCATCAAAGAGCAGAAGCAGTAAACAGTTTAGTTTATGAAGCAAATGCAAGAGTTAGAGATCCTGTTTATGGATGTGTTGGAGCAATATCATACCTTCAAAGTCAAGTTTCACAATTACAAATGCAACTTGCAGTGGCTCAAGCAGAGATACTCTGCATCCAAATGCAGCAAGAATCTGCTACAGTTACTGACTCATTACCAACACATGTTGACCAAGATGACAAATTTATGCTCCTATCAGAAAATAATAATTGCTATGGAGTCCTTCCACAATATCTCAACTTTCCATCTTCTTCTTCTTCATCTTCCAATGTATTCCAAGATTATGAGCCTCTTAAGAGAGAGACTTTTTGGACTTAA 531 0.3898 MGSGSSPCASCKLLRRRCTQECIFAPYFPSDDPRKFAIVHKVFGASNISKMLQELPNHQRAEAVNSLVYEANARVRDPVYGCVGAISYLQSQVSQLQMQLAVAQAEILCIQMQQESATVTDSLPTHVDQDDKFMLLSENNNCYGVLPQYLNFPSSSSSSSNVFQDYEPLKRETFWT 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g00916 176 Coils Coil 86 106 - -
Trre5g00916 176 ProSiteProfiles LOB domain profile. 6 107 IPR004883 -
Trre5g00916 176 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 5 124 - -
Trre5g00916 176 Pfam Lateral organ boundaries (LOB) domain 7 104 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g00916 Trre-Chr5 6299936 6301357 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g00916 2 176 AS2 family AT2G30130 64.398 1.84e-77 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Trre5g00916 LOB 1.1e-42 No_clan