Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g00893 ATGACCTCTTCATTTTTTTCTGACCTTCTTAATTCTCCAACCGACCAAAACCTTAGAGACACCGAAAGATCTCATCATAATAATCAAGTGTTGTCGGATCAAAACGGGTCGGGTTTGCCCAAGTTCAAATCTACACCTCCTCCATCTCTTCCTCTTTCTCCTACACCACTTTTTTCTCCTTCTTCTTACTTTTCTATCCCTCCTGGTTTCTCCCTCTCTGAGCTTCTTGATTCTCCTGTTCTCCTTAATTCTTCTCATATTCTTCCATCACCAACAACTGGATCATTTGCAAATACTCAAAGTCTTAATAATTGGAAAAACAATTATGGTGAAAAGCAGCAGAATGTGAAAGCAGAAGATAAAACCTTCTCAAATTTCTCTTTCCAAGCTCAACCTGTGCTTAATCAACCTTCAGCCGCCACAGCTCAAAACAATGGATGGAGTATGGTGAAAACAGAAAACTCTTCTTCAATGCAGAGTTTCAAACCAGAGAATAATAATTCTGCTAGTGAACAAAATAACAACAAAAGAGCTTTACAATCATCAGATAATTACAACAATTATCAAACTCAACCACAGCAGCAACAAGTTCAAACACTTAGTAGAAGATCAGATGATGGATACAATTGGAGAAAATATGGACAAAAACAAGTGAAAGGAAGTGAAAATCCAAGAAGCTATTATAAATGCACATATCCAAATTGTCCTACAAAGAAAAAAGTCGAAAAGAGGGCTATAGATGGACAAATTACTGAGATAGTTTATAAAGGTACTCATAATCATCCTAAGCCTTTGGCTAATAAAAGGAACATGAGTTCAATGTCTTCCTCGTCGTCGTCAGTTGCAAATCCTCCTTCAAATGGTTTTGAAAATGAAATGCAAATGGTTTTGGTTACTACGCCGGAGAATTCGTCCATATCGATTGGAGATGATGATTTTGAGCAGAGTTCTCATAAATCAGGTGGAGATCATGAGTTTTGTGATGATGATCAACCCGATGCCAAAAAATGGAGAATAGAAGGTGAAAATGAGGGGATATCATCAGGAGTTGGTAATAGAACAGTGAGGGAACCTAGAGTTGTGGTTCAGACAACAAGTGACATTGATATTCTAGATGATGGGTATAGATGGAGAAAATATGGGCAGAAAGTAGTCAAGGGAAATCCAAATCCAAGGAGTTACTATAAGTGTACAAACCCAGGATGTCCAGTGAGGAAACATGTGGAAAGAGCCTCACAAGATCTAAGAGCAGTAATCACAACCTATGAAGGAAAACACAATCATGATGTTCCTGCGCCACGTGGCAGTGGTAGCCACTCTATCAACAAACCACAACCAAATATGCCAACTATGAACAACAACAACAATAATTCCAACAATGGTTTCTTCAACCATCAGATGATGCAAAACAATGGATTTCCAATGGATTCTTACATGAATAATATGAATCAACGTGTTAATAATATTGTTAGAGGTAGAGCCAAGGATGAGCCTGTAGAAGATAACTCCTTTTTAGAATCTTTGCTATCTTGA 1533 0.3777 MTSSFFSDLLNSPTDQNLRDTERSHHNNQVLSDQNGSGLPKFKSTPPPSLPLSPTPLFSPSSYFSIPPGFSLSELLDSPVLLNSSHILPSPTTGSFANTQSLNNWKNNYGEKQQNVKAEDKTFSNFSFQAQPVLNQPSAATAQNNGWSMVKTENSSSMQSFKPENNNSASEQNNNKRALQSSDNYNNYQTQPQQQQVQTLSRRSDDGYNWRKYGQKQVKGSENPRSYYKCTYPNCPTKKKVEKRAIDGQITEIVYKGTHNHPKPLANKRNMSSMSSSSSSVANPPSNGFENEMQMVLVTTPENSSISIGDDDFEQSSHKSGGDHEFCDDDQPDAKKWRIEGENEGISSGVGNRTVREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTNPGCPVRKHVERASQDLRAVITTYEGKHNHDVPAPRGSGSHSINKPQPNMPTMNNNNNNSNNGFFNHQMMQNNGFPMDSYMNNMNQRVNNIVRGRAKDEPVEDNSFLESLLS 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g00893 510 MobiDBLite consensus disorder prediction 152 204 - -
Trre5g00893 510 MobiDBLite consensus disorder prediction 425 462 - -
Trre5g00893 510 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 76 459 IPR044810 GO:0003700
Trre5g00893 510 MobiDBLite consensus disorder prediction 1 17 - -
Trre5g00893 510 MobiDBLite consensus disorder prediction 1 54 - -
Trre5g00893 510 MobiDBLite consensus disorder prediction 312 331 - -
Trre5g00893 510 MobiDBLite consensus disorder prediction 303 331 - -
Trre5g00893 510 SUPERFAMILY WRKY DNA-binding domain 203 264 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre5g00893 510 ProSiteProfiles WRKY domain profile. 366 431 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre5g00893 510 MobiDBLite consensus disorder prediction 152 224 - -
Trre5g00893 510 MobiDBLite consensus disorder prediction 259 289 - -
Trre5g00893 510 MobiDBLite consensus disorder prediction 265 289 - -
Trre5g00893 510 MobiDBLite consensus disorder prediction 438 462 - -
Trre5g00893 510 SUPERFAMILY WRKY DNA-binding domain 363 431 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre5g00893 510 Gene3D WRKY domain 190 265 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre5g00893 510 Gene3D WRKY domain 358 424 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre5g00893 510 SMART WRKY_cls 204 263 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre5g00893 510 SMART WRKY_cls 371 430 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre5g00893 510 Pfam WRKY DNA -binding domain 205 262 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre5g00893 510 Pfam WRKY DNA -binding domain 372 428 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre5g00893 510 FunFam WRKY transcription factor 193 265 - -
Trre5g00893 510 MobiDBLite consensus disorder prediction 28 42 - -
Trre5g00893 510 FunFam WRKY transcription factor 33 358 424 - -
Trre5g00893 510 ProSiteProfiles WRKY domain profile. 205 264 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g00893 Trre-Chr5 6069108 6073303 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g00893 39 509 WRKY Transcription Factor Family AT2G38470 46.758 5.24e-111 337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Trre5g00893 WRKY 5.6e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g00893 K13424 - gmx:100127385 535.413