Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g00889 ATGGGAACTGAAACTGAGTCAAGAGATAGTTCTCTCATTCTCATCAAGCAAGGAGCTGAAGCTAGGGTTTTTGAGACTAATTTTGTGGGAAGAAGGTCTGTTGTCAAGGAGCGATTCTCAAAGAAGTACAGGCATCCAATTTTGGATTCTAAATTGACACTCAAGCGCTTAAATGCGGAGGCGAGGTGCACAACCAAGGCAAGGCGACTTGGGGTTTGTACCCCTGTGTTGTATGCTGTGGATCCTGTGTTGCACACTTTAACATTTGAATTTGTCGACGGACCTTCTGTCAAAGATGTATTTCTTGAATTTGGATCATGTGGTATCAATGAAGAGCGCCTAGGCAAAATTGCGTCCCAAATTGGTGATGTAATTGCAAAGTTACATGATGGTGGTCTCGTTCATGGTGATTTAACAACATCAAACATGTTACTAAAGAAAGATACCGATCAGTTGGTTCTTATCGACTTCGGTTTGAGCTTCACTTCAACTCTGCCAGAAGATAAAGCTGTCGATTTGTATGTCCTGGAAAGAGCCCTTGTTTCAATGCATTCTTCATGTGGTAATGTGATGGATCAAATACTTGCTGCTTACCGCAAGTCATCGAAACAGTGGTCATCCACAATGAACAAGCTAGCAGATGTGCGACAAAGAGGACGAAAGAGGACCATGGTTGGATGA 681 0.4273 MGTETESRDSSLILIKQGAEARVFETNFVGRRSVVKERFSKKYRHPILDSKLTLKRLNAEARCTTKARRLGVCTPVLYAVDPVLHTLTFEFVDGPSVKDVFLEFGSCGINEERLGKIASQIGDVIAKLHDGGLVHGDLTTSNMLLKKDTDQLVLIDFGLSFTSTLPEDKAVDLYVLERALVSMHSSCGNVMDQILAAYRKSSKQWSSTMNKLADVRQRGRKRTMVG 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g00889 226 Gene3D Phosphorylase Kinase; domain 1 20 92 - -
Trre5g00889 226 FunFam Protein kinase superfamily protein 107 223 - -
Trre5g00889 226 ProSitePatterns Tyrosine protein kinases specific active-site signature. 133 145 IPR008266 GO:0004672|GO:0006468
Trre5g00889 226 FunFam TP53-regulating kinase isoform X1 20 92 - -
Trre5g00889 226 ProSiteProfiles Protein kinase domain profile. 9 226 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g00889 226 NCBIfam KEOPS complex kinase/ATPase Bud32 18 220 IPR022495 GO:0004674
Trre5g00889 226 Pfam Protein kinase domain 55 162 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g00889 226 SUPERFAMILY Protein kinase-like (PK-like) 14 174 IPR011009 -
Trre5g00889 226 Gene3D Transferase(Phosphotransferase) domain 1 108 223 - -
Trre5g00889 226 SMART serkin_6 9 225 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g00889 226 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 5 226 IPR022495 GO:0004674
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g00889 Trre-Chr5 6049766 6051696 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g00889 87 176 EF-hand Containing Proteins AT3G50530 36.957 7.97e-06 44.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Trre5g00889 Pkinase 2.2e-10 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g00889 K08851 - gmx:100782376 388.267