Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g00886 ATGAAAGATGTTGAACTTGTAAAACCATCAAAGTTCAGCCCTTCTTGTATTCTTTCTCTTTCTACACTTGACAATAGAGGCATTTATAATAACCATTGTCAAACTGTTCATGTATATCGATCATCAGAAACTCGTGATTTTGATTCCAGTTTTAACCTTTGTCATGTATTCAAAGAAGCACTCTCAAAGGCTTTGTTCTATTATTATCCTTTTGCAGGTAGACTAGTGAAACATGCTGATGATGGAAAACTTAGAGTCAATTGCAACCCTAATGCAGAAAACTATGGTGTTCCATTCTTGGAAGCAATTGCTAATTGCACCCTTTCTTCTATAAATTATTTAGACAACACTGACACAGAAATTGCAAAGCATTTGGTGCTTAATCCTCAAGATTTAAGTTATCCTTTGGTGTTCAAGGTAACAAAATTTCTTTGTGGGGGTTTCACAATTGGAATGGGGGTGTTGCATGCAGTTTGTGATGGATTTGGTGCATCTCAATTCTTCAACACAATTGTTGAACTTGCAAGAGGAAGAATTGAGCCGTCAATGAAACCTGTATGGGAAAGAGAGAGACTAGTTGGATCAATAACTAAACAACCATTTCCACTATTCCCCATGAACAAAGAATCTATTGCATTTTCACCTTTTTTGAATCAAACCAATAGTACTAATATTAAGCAATACTGTTTTAAAATGGAGGGTGAAATGATAACAAAGCTTAAGTTAAGTTTAATGAAGGAAAGTGAAAATATAAGAATCACAACCTTTGAATCACTTGCAGCTTATATTTGGAGATCAAGAGTAAGAGCCTTAAAACTTAACAACAATGGAGATACAATGTTGACTGTGTTAGTTGGTATGAGAAGAAATTTGAAGGGTTATGATCCAATACCAAAAGGGTTTTATGGTAATTCTGTTATGGAAGCAAACATTGTGTTAAAAGTGAATGATCTAAATGAAATGTCACTCTATGAAATTGTTAAGTTGATCAAAGAGGCTAAAAATGTTGCTTCAAGTGCCGATTATGTCAAAAACACAATCGACTCTTTGGAGACGAATTTTAAGGATCGTGTTAACATGGTAAAAAGTACCGGTGCGGTAACGGTTTTGACCGAGTGGAAGCATTTGGGTTTTATGGGTGAAAATGTAGATTTTGGAGGGAATGAAATAGTAAATTTAGTACCGGCACCATGCAACTTATTTGCATCTGTGGAAATGAGTGTTATGTCATCTTCTAATAAATTTGATGATGTTAATCCATCAATGAAAGGAGGAATTAATCTTTTTACATCACTTCCTATTGCTGCCATGCCTAAGTTCAAGGAAGAAATTGAAGCTTTAAGATCTCTTAGTTGA 1356 0.3466 MKDVELVKPSKFSPSCILSLSTLDNRGIYNNHCQTVHVYRSSETRDFDSSFNLCHVFKEALSKALFYYYPFAGRLVKHADDGKLRVNCNPNAENYGVPFLEAIANCTLSSINYLDNTDTEIAKHLVLNPQDLSYPLVFKVTKFLCGGFTIGMGVLHAVCDGFGASQFFNTIVELARGRIEPSMKPVWERERLVGSITKQPFPLFPMNKESIAFSPFLNQTNSTNIKQYCFKMEGEMITKLKLSLMKESENIRITTFESLAAYIWRSRVRALKLNNNGDTMLTVLVGMRRNLKGYDPIPKGFYGNSVMEANIVLKVNDLNEMSLYEIVKLIKEAKNVASSADYVKNTIDSLETNFKDRVNMVKSTGAVTVLTEWKHLGFMGENVDFGGNEIVNLVPAPCNLFASVEMSVMSSSNKFDDVNPSMKGGINLFTSLPIAAMPKFKEEIEALRSLS 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g00886 451 Gene3D - 1 202 IPR023213 -
Trre5g00886 451 PANTHER ACYL TRANSFERASE 4 3 445 - -
Trre5g00886 451 Gene3D - 217 444 IPR023213 -
Trre5g00886 451 Pfam Transferase family 4 446 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g00886 Trre-Chr5 6041371 6043425 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g00886 1 396 Monolignol Biosynthesis Gene Families AT5G48930 27.737 2.75e-33 128
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g00886 K20240 - gmx:100801843 417.542