Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g00885 ATGGCTTATCAAAAAGTTACCCTAAACCTTAAAATGAAAGATGTTGAACTTGTAAAACCATCAAAGTTCAGCCCTTCTTGTATTCTTTCTCTTTCTACACTTGACAATAGAGGCATTTATAATAACCATTGTCAAACTGTTCATGTATATCGATCATCAGAAACTCGTGATTTTGATTCCAGTTTTAACCTTTGTCATGTATTCAAAGAAGCACTCTCAAAGGCTTTGTTCTATTATTATCCTTTTGCAGGTAGACTAGTGAAACATGCTGATGATGGAAAACTTAGAGTCAATTGCAACCCTAATGCAGAAAACTATGGTGTTCCATTCTTGGAAGCAATTGCTAATTGCACCCTTTCTTCTATAAATTATTTAGACAACACTGACACAGAAATTGCAAAGCATTTGGTGCTTAATCCTCAAGATTTAAGTTATCCTTTGGTGTTCAAGGTAACAAAATTTCTTTGTGGGGGTTTCACAATTGGAATGGGGGTGTTGCATGCAGTTTGTGATGGATTTGGTGCATCTCAATTCTTCAACACAATTGTTGAACTTGCAAGAGGAAGAATTGAGCCGTCAATGAAACCTGTATGGGAAAGAGAGAGACTAGTTGGATCAATAACTAAACAACCATTTCCACTATTCCCCATGAACAAAGAATCTATTGCATTTTCACCTTTTTTGAATCAAACCAATAGTACTAATATTAAGCAATACTGTTTTAAAATGGAGGGTGAAATGATAACAAAGCTTAAGTTAAGTTTAATGAAGGAAAGTGAAAATATAAGAATCACAACCTTTGAATCACTTGCAGCTTATATTTGGAGATCAAGAGTAAGAGCCTTAAAACTTAACAACAATGGAGATACAATGTTGACTGTGTTAGTTGGTATGAGAAGAAATTTGAAGGGTTATGATCCAATACCAAAAGGGTTTTATGGTAATTCTGTTATGGAAGCAAACATTGTGTTAAAAGTGAATGATCTAAATGAAATGTCACTCTATGAAATTGTTAAGTTGATCAAAGAGGCTAAAAATGTTGCTTCAAGTGCCGATTATGTCAAAAACACAATCGACTCTTTGGAGACGAATTTTAAGGATCGTGTTAACATGGTAAAAAGTACCGGTGCGGTAACGGTTTTGACCGAGTGGAAGCATTTGGGTTTTATGGGTGAAAATGTAGATTTTGGAGGGAATGAAATAGTAAATTTAGTACCGGCACCATGCAACTTATTTGCATCTGTGGAAATGAGTGTTATGTCATCTTCTAATAAATTTGATGATGTTAATCCATCAATGAAAGGAGGAATTAATCTTTTTACATCACTTCCTATTGCTGCCATGCCTAAGTTCAAGGAAGAAATTGAAGCTTTAAGATCTCTTAGTTGA 1389 0.3456 MAYQKVTLNLKMKDVELVKPSKFSPSCILSLSTLDNRGIYNNHCQTVHVYRSSETRDFDSSFNLCHVFKEALSKALFYYYPFAGRLVKHADDGKLRVNCNPNAENYGVPFLEAIANCTLSSINYLDNTDTEIAKHLVLNPQDLSYPLVFKVTKFLCGGFTIGMGVLHAVCDGFGASQFFNTIVELARGRIEPSMKPVWERERLVGSITKQPFPLFPMNKESIAFSPFLNQTNSTNIKQYCFKMEGEMITKLKLSLMKESENIRITTFESLAAYIWRSRVRALKLNNNGDTMLTVLVGMRRNLKGYDPIPKGFYGNSVMEANIVLKVNDLNEMSLYEIVKLIKEAKNVASSADYVKNTIDSLETNFKDRVNMVKSTGAVTVLTEWKHLGFMGENVDFGGNEIVNLVPAPCNLFASVEMSVMSSSNKFDDVNPSMKGGINLFTSLPIAAMPKFKEEIEALRSLS 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g00885 462 Pfam Transferase family 11 457 - -
Trre5g00885 462 Gene3D - 5 213 IPR023213 -
Trre5g00885 462 PANTHER ACYL TRANSFERASE 4 9 456 - -
Trre5g00885 462 Gene3D - 228 455 IPR023213 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g00885 Trre-Chr5 6041338 6043425 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g00885 8 407 Monolignol Biosynthesis Gene Families AT5G48930 27.470 1.20e-33 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g00885 K20240 - gmx:100801843 422.55