Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g00884 ATGGCTTATCAAAAAGCTACACTAGACCTTAAAATGAAAGATGTTGTGCTTGTAAAACCATCAAAGTCTACTCCTTCTTGTATTCTTTCTCTTTCTACACTTGACAATAAAATCTCCAATAATAACATTTGCCAATTTGTTCATGTGTATCGATCGTCAATAATTCTTGATTCAGATTCCAGTTTCAATCCTTGTGACGATTTCAAAGAGGCACTTTCAAAGGCTTTATTTTATTACTATCCTCTCGCAGGTAGACTAGTGAAACATGATGATGGTAAACTTAGAGTTGAGATCAATGCCAACAATGCAGAATTTGGTGTTCCATTCATGGAAGCTATTGCTAACTGCACCCTTTCTTCTCTTCATTACTTGGACGGTAATGACACTGAAATGGCTAGTCAGTTGGTGCTTGATTTTCCTTCTCCTCAAGATAAAACCTACCCTTTGGTTTTCATGGTGACAAAATTTCTTTGTGGAGGTTTCACAATTGGAATGGGAGTGTCACATGCACTTTGTGATGGATTTGGTGGATCTCAATTCTTCAAAGCAATTGTTGAACTTGCAAGCGGAAAAACCGAGCCATTGGTGAAACCTGTCTGGGAAAGAGAGAGACTAGTTGGTTCAATAACTAAACAACCATTTCCACCTTGTCCCATAGACAGAGAATCTGCTGCATTTTCACCTTTCTTGAATCAAACCAATAGTACAACAGATATTAAACAATTTTGTTTCAAAGTGAATGGTGAAATAATAACAAGGCTTAAGTTAAGTTTAATGAAGGAAAGTGAAGAAATAAAGTTCACAACTTTTGAATCACTTGCAGGTTATGTGTGGAGGTCAAGAGCAAGAGCCTTAAAACTTAGCAACAATGGAAAAACAATGTTGAAAATTTTAGTTGGTATTAGGCGCCACATGCTGGGTTATGATCCATTGCCTGAAGGGTATTATGGTAATTCTATTATGGATGGAAAACTTGTGTTACAAGTTAGTGAGCTTAATGAAAGACCAGTCTATGAAATTGCTAAGTTGATTAAAGAGACTATTAATGTTGTTTCCACCACTGATTATGTCACGAATTCGATCGACACTTGGGAAACGATTAATCAAGAAGAGGATATTAGCATGGAATTGGAAGCTAGTGGTGCAGTAACAGTTCTAACAGAGTGGAAGCATTTAGGTTTCATGGAAAATGTAGATTTTGGAAAGAATGAAATAGTGAATTTTGTACCAGCACCTTGTAAGATGCTTGGAACTGTGGATGTTTGCATTTTCATGCATCCTAATAAATTTGATGATAATGATCCATCCATGAAAGGAGGTGTTAAGATTTTTACATCACTCCCTGTTGATGCAATGCCCAAGTTTAAGGAGGAAATTGAAGCTTTAAAGGTTCTTTATTGA 1401 0.3633 MAYQKATLDLKMKDVVLVKPSKSTPSCILSLSTLDNKISNNNICQFVHVYRSSIILDSDSSFNPCDDFKEALSKALFYYYPLAGRLVKHDDGKLRVEINANNAEFGVPFMEAIANCTLSSLHYLDGNDTEMASQLVLDFPSPQDKTYPLVFMVTKFLCGGFTIGMGVSHALCDGFGGSQFFKAIVELASGKTEPLVKPVWERERLVGSITKQPFPPCPIDRESAAFSPFLNQTNSTTDIKQFCFKVNGEIITRLKLSLMKESEEIKFTTFESLAGYVWRSRARALKLSNNGKTMLKILVGIRRHMLGYDPLPEGYYGNSIMDGKLVLQVSELNERPVYEIAKLIKETINVVSTTDYVTNSIDTWETINQEEDISMELEASGAVTVLTEWKHLGFMENVDFGKNEIVNFVPAPCKMLGTVDVCIFMHPNKFDDNDPSMKGGVKIFTSLPVDAMPKFKEEIEALKVLY 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g00884 466 Gene3D - 228 459 IPR023213 -
Trre5g00884 466 Pfam Transferase family 16 461 - -
Trre5g00884 466 Gene3D - 5 216 IPR023213 -
Trre5g00884 466 PANTHER ACYL TRANSFERASE 4 10 460 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g00884 Trre-Chr5 6018023 6021193 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g00884 8 411 Monolignol Biosynthesis Gene Families AT5G48930 28.230 4.23e-32 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g00884 K20240 - gmx:100801843 472.626