Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g00880 ATGCCTTCAACTCTTCAATGGCTAAGCCTAGTTGGTATCATTTGGCTCCAAGCCATAAATGGAACAAACTCAAATTTCCCTGCTTACTCTTCCCAACTAAAACAGCTTCTTTCCATTTCACAAATTCAGCTCAATAACCTTGCTTTTGCATCTGATGCCGGCAAACTTTTTGGTTGGTTTTCCGGCCTTGCAGCTATTTACCTTCCCCTCTGGCTCGTCCTCACCATCGGTTCGTTTCTGGGACTAATCGGTTATGGCGTGCAATATCTCTTCATAACCAACCAAATTTCTTCTCTATCATATTGGCATGTGTTCTTACTAACTTTCCTTGCCGGAAATAGCATTTGTTGGATCAACACTGTCTGTTATGTCGTTGCCATACGAAACTTTCTATCCGATCGTCAAGTTGCCGTTGGATTAACAACTAGTTATCAAGGATTAAGTGCAAAGATTTATACCAATATTGTTGATGTTGTTTCGTCACACAATAAGGCTAAAACTTTTCTTTTCTTGAACTCTTTTGTACCTGTTGTAGTTGGCTTTATAGTAGCTCCTCTAGTAAGAGAAATCGAAGTGAAAAATCCTAAGCATTCTAGTGTTGGTTTTGCTTTGATGTTTGTTATTACAATTGCAACTGGTATATATGCTGTAATGAGTAGCTTGCAAATTTTCACAAACAAAATATCTTCACTTGGTGTCCTTATTGGTATTTTAGTATCACTTTTCTTACCACTATTGCTTCCAATTTCCGTGAAGATCAAGGAACTGTTTGAAACATGGCATAAAAAAAGAGAAAGATTAAGAATATACCATTTTACCATGGAGGAGAATACTACATATGAAGAGAGAATAGAGAATGAAGTGAAAGAGAAAGAAGGTGGAGATAGTTGTGAATTTCAAGAGGTTGGTGTAATGGAAGAAATTGGAGTGAAGTTAATGTTGAGAAGAATCAATTTTTGGTTATATTTCTTTGTCTATTTTTTTGGTGCAACAATTGGTTTAGTATTTCTTAACAATTTGGGACAAATAGCTGAATCTAGAGGTTGCTCTGCTACTTCATCTTTGGTATCTTTGTCTTCTTCATTTGGATTCTTCGGCCGGCTCATTCCATCTCTTATGGACTATTTCTACAGGGGAAAATATACAATTTCAAGACCTACATTTATGGTATCAGTTATGGCACCAACAGCAGGTGCATTCTTCTTACTTCTCAACAAAACTGATCTTTCTCTTTACATAAGCACAGCTGTGATTGGAGTTTCTACTGGAGCAATCACTTCCACTGCTATTTCTACAACAACTGAGCTATTTGGTACAAAGAATTTCTCTGTAAATCATAATGTGGTTGTGGCAAATATTCCAATGGGATCATTTTTGTTTGGTTATTCAGCTGCATTTATTTACCACAAGGAAGGAAATGAACATGGAAAATGCATGGGTATGGAATGTTATAGTAACACTTTTATCATTTGGGGTTCCTTTTGTTGCCTTGGAACTTTATTAGCTTTGATTCTACATTTTAGAACTCGTAAGTTTTACTCACAAAAACTATAG 1554 0.3623 MPSTLQWLSLVGIIWLQAINGTNSNFPAYSSQLKQLLSISQIQLNNLAFASDAGKLFGWFSGLAAIYLPLWLVLTIGSFLGLIGYGVQYLFITNQISSLSYWHVFLLTFLAGNSICWINTVCYVVAIRNFLSDRQVAVGLTTSYQGLSAKIYTNIVDVVSSHNKAKTFLFLNSFVPVVVGFIVAPLVREIEVKNPKHSSVGFALMFVITIATGIYAVMSSLQIFTNKISSLGVLIGILVSLFLPLLLPISVKIKELFETWHKKRERLRIYHFTMEENTTYEERIENEVKEKEGGDSCEFQEVGVMEEIGVKLMLRRINFWLYFFVYFFGATIGLVFLNNLGQIAESRGCSATSSLVSLSSSFGFFGRLIPSLMDYFYRGKYTISRPTFMVSVMAPTAGAFFLLLNKTDLSLYISTAVIGVSTGAITSTAISTTTELFGTKNFSVNHNVVVANIPMGSFLFGYSAAFIYHKEGNEHGKCMGMECYSNTFIIWGSFCCLGTLLALILHFRTRKFYSQKL 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g00880 517 Gene3D MFS general substrate transporter like domains 197 509 IPR036259 -
Trre5g00880 517 SUPERFAMILY MFS general substrate transporter 7 511 IPR036259 -
Trre5g00880 517 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 7 514 - -
Trre5g00880 517 Pfam Nodulin-like 6 250 IPR010658 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g00880 Trre-Chr5 5991693 5993711 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g00880 5 516 Nodulin-like Gene Family AT2G30300 48.771 7.10e-154 447
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g00880 - - gmx:100800763 761.525