Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g00876 ATGGCACATTCTCCTAATTCTAATTATGTTGCATTTGCTTTGGTCTTCCTTCTAATAGGGACCTCTTCAGCTCAACTTTCTGAGAATTTTTATTCTAAAAAATGTCCCAAAGTTTTTGACACGGTTAAATCTGTTGTTAAATCAGCCGTGGCCAAAGAACCTCGCATCGGAGCATCTCTCCTTCGCCTCTTCTTCCACGACTGCTTTGTTGATGGCTGTGATGGATCAATACTACTTGATGACACTTCATCCTTTAGAGGAGAGAAAACTGCAGCTCCTAACAACAATTCAGTGAGAGGTTATGAAGTAATTGATGCTATCAAATCTAAGGTGGAAGCAATATGCCCCGGTTTGGTCTCATGTGCTGATATTGTGGCCATTACTGCTCGTGACTCTGTTGTCATTCTTGGAGGGCCTTTTTGGAATGTAAAAGTTGGAAGAAGAGATTCAAGAACAGCAAATTTCACTGCAGCTAACACTGGTGTGATTCCACCTCCTACATCTAACCTAAGTAACCTTGTCTCAACTTTTAAAGCTCAAGGACTTTCTGCCAAGGACATGGTTGCTTTATCTGGAGCACACACAATAGGGAAATCAAGATGTACAAGTTTCAGAAACCACATATACAATGACAGCAACATTGACAGTACATTTGCTAAGATAAGGCAAAAGAATTGTCCAAAGAAAAGTGGCTCAGGAGACAATAATCTAGCAAATCTAGATTTTAGAACTCCAACTTATTTTGACAACAATTACTACAAGAATCTCATTATCAAAAGAGGATTACTTCATTCTGATCAAGTACTTTTCAATGGTGGATCCACTGATTCACTTGTTAAAACTTATAGCCAAAATGATAAAGCCTTTGATTCTGATTTTGTTGCTGCAATAATTAAGATGGGAAATAATAAGCCCTTAACTGGGAAACAAGGAGAGATTAGGAAGAATTGCAGGAGATTGAATTAG 966 0.383 MAHSPNSNYVAFALVFLLIGTSSAQLSENFYSKKCPKVFDTVKSVVKSAVAKEPRIGASLLRLFFHDCFVDGCDGSILLDDTSSFRGEKTAAPNNNSVRGYEVIDAIKSKVEAICPGLVSCADIVAITARDSVVILGGPFWNVKVGRRDSRTANFTAANTGVIPPPTSNLSNLVSTFKAQGLSAKDMVALSGAHTIGKSRCTSFRNHIYNDSNIDSTFAKIRQKNCPKKSGSGDNNLANLDFRTPTYFDNNYYKNLIIKRGLLHSDQVLFNGGSTDSLVKTYSQNDKAFDSDFVAAIIKMGNNKPLTGKQGEIRKNCRRLN 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g00876 321 ProSitePatterns Peroxidases active site signature. 57 68 IPR019794 GO:0004601
Trre5g00876 321 Gene3D - 29 318 - -
Trre5g00876 321 SUPERFAMILY Heme-dependent peroxidases 25 321 IPR010255 GO:0004601|GO:0006979|GO:0020037
Trre5g00876 321 PRINTS Plant peroxidase signature 137 152 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trre5g00876 321 PRINTS Plant peroxidase signature 118 128 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trre5g00876 321 PRINTS Plant peroxidase signature 239 254 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trre5g00876 321 PRINTS Plant peroxidase signature 295 308 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trre5g00876 321 PRINTS Plant peroxidase signature 185 197 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trre5g00876 321 PRINTS Plant peroxidase signature 59 79 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trre5g00876 321 PRINTS Plant peroxidase signature 35 54 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trre5g00876 321 PRINTS Plant peroxidase signature 255 272 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trre5g00876 321 PRINTS Plant peroxidase signature 99 112 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trre5g00876 321 Pfam Peroxidase 42 285 IPR002016 GO:0004601|GO:0006979|GO:0020037
Trre5g00876 321 ProSitePatterns Peroxidases proximal heme-ligand signature. 186 196 IPR019793 -
Trre5g00876 321 Gene3D Peroxidase, domain 2 164 300 - -
Trre5g00876 321 PANTHER PEROXIDASE 72-RELATED 21 319 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trre5g00876 321 FunFam Peroxidase 29 195 - -
Trre5g00876 321 PRINTS Haem peroxidase superfamily signature 241 256 IPR002016 GO:0004601|GO:0006979|GO:0020037
Trre5g00876 321 PRINTS Haem peroxidase superfamily signature 57 71 IPR002016 GO:0004601|GO:0006979|GO:0020037
Trre5g00876 321 PRINTS Haem peroxidase superfamily signature 119 136 IPR002016 GO:0004601|GO:0006979|GO:0020037
Trre5g00876 321 PRINTS Haem peroxidase superfamily signature 186 201 IPR002016 GO:0004601|GO:0006979|GO:0020037
Trre5g00876 321 PRINTS Haem peroxidase superfamily signature 137 149 IPR002016 GO:0004601|GO:0006979|GO:0020037
Trre5g00876 321 ProSiteProfiles Plant heme peroxidase family profile. 25 321 IPR002016 GO:0004601|GO:0006979|GO:0020037
Trre5g00876 321 CDD secretory_peroxidase 25 319 IPR033905 GO:0004601|GO:0042744
Trre5g00876 321 FunFam Peroxidase 164 300 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g00876 Trre-Chr5 5946514 5950651 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g00876 24 321 Peroxidase AT5G05340 68.792 1.71e-152 429
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g00876 K00430 - gmx:100813250 504.982