Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g00875 ATGTTGAAAATGCTTGTTGACAGCATATCCTCATTTTTGCATTTATCATTTTCTGGAAATATGACCTCAGAACCAGTCTCAAAATATCACCATAAGGCGGAGGAGATACTTAAGTTATTGAAGCCGATCATTGATGCTTTTGCTAATTCTGAGCTAGCCTCCGACGAAGTGCTTAGTAAAACATCCGAAGAACTTGGTCATGCTGTTGATGAATTAAAGGAGCATGTTGAGAATTGGCACCTATTGTCTAGCAAAGTTTACTTTGTTATGCAAGTTGAACCCTTGATATCTAGGATTCGGACTTCAGGTCTCAAGGTCTTGCAGCAGCTGAAGGTTTCAAAGCAATTTCCCAATGATGAATTGAGTTCTGAACATTTGGAGAACTGTGTTCAGAAACTTAAGCTTTTAGGACTTGAAGAAAACTCATCCGTCATTAAGGAAGCTATTATGGAACAACTGGATGGTGCAGGACCTAGTACAGAGATCCTGGAAAAAATTGCTGATAGCCTGGATCTAAGATCTAACGAGGAGGTTCTGATTGAGGCTGTGGCCCTAGAAAAGTTGAAGGAGAATGCTGAACAGACTGAAAAGACTGCAGAAGCTGAATACATTGATCAAATTATTGCTGTTATAACGCGTATGCATGAGCGCCTTGTTGTGCTTAAGCAAGCCCAAAGTTCCAGTCCTGTTCCAGTACCTGCTGATTTTTGTTGTCCTCTTTCTTTAGAGTTGATGACTGATCCGGTGATCGTGGCTTCAGGGCAAACTTATGAGCGGGCTTTTATCAAGAACTGGATTGATCTTGGTCTTACTGTTTGTCCAAAGACACATCAGGCTCTGGCTCACACCAACCTAATACCTAACTACACGGTAAAGGCACTAATTGCAAACTGGTGTGAATCAAACAATGTGTCACCAACCTTAAATCAAGCATCGATCCTTCATGGGTATATGGAGTCTGGTACAACCAGGGAATCTCCTCTTTTTCCTCATTCCAGGAGTAACCTGCCATCCTCACCCGAGTCCGCTCGTTCTCGTTCTTTTAGTTCGCCAGGTAATAACATACCTTCTTCAGGTGGAATCCAGCGAGAGGGAACATCACCTGTGCACCCTCGTTCAACTTCAGAAGGTTCCTTTAGTGGCATAATTAATGGGCAATATATGGATGCTGCTAGAACATCACCCACGGCTTTAGACGACAGGTCTGCTAGCTCAGATGAAAGCAGTGTCGATTCAATTGGCCAACCATCAATATCACCATCTAGAAGAGAATCTTCCGGTGCCTTCAGCTCCGAACTATCTCAAAACCATGTTAGAGCTGTATCTGATTCTGGTGCATTTTCTGATGCAAATTATCAAGAAACACAAGGTGATGACAGCAATGCTTCTCAGCTGTCAACAAGTCCAGGCTACAGTAGAGATACTTCTGGCGAATTAAATCCAGGACCAGATGCTGCTGGTTCTGCTCCCATGCCATCAATGCAGAGGGAACCTGAGTTCCCACCCCGATTGATGGAGGCAAGGTCTCGGAGCCAAGCTATATGGAGGAGGCCATCAGAAAGGCTGGTTCCTAGGATAATATCTTCTTCTGTTGAACCAAGAGTTGATCTTTCTGGTATTGAGGCACAGGTTCGAAGTTTAGTTGAGGGCTTGAGGAGCATTGATCTTGACATTCAGAGAGAGGCAACTTCAGAAATCCGTCTTCTTGCTAAACACAATATGGATAATCGAATTGCAATTGCAAATTGTGGAGCCATTAACATATTAGTCGACTTACTTCAATCAGAAGATTCAAGGATCCAGGAAAATGCTGTTACAGCGCTTCTTAACTTATCTATCAATGATAACAACAAAACTGCAATTGCAAATGCCGGTGCAATTGAACCTCTGATTCATGTTCTTGAGCACGGGAGCCCAGAAGCGAAGGAGAATTCAGCTGCCACTCTTTTCAGCTTGTCGGTGATTGAGGAAAACAAGGTTAACATAGGGAGATCTGGGGCAATTAGACCACTTGTAGATTTATTAGGGAATGGAACCCCGAGGGGAAAAAAGGATGCTGCCACTGCTTTGTTTAATTTGTCAATATTTCACGAGAACAAGAATCGGATTGTGCAAGCTGGTGCTGTAAAGCACCTTGTGGAGTTGATGGACCCAGCGGCTGGAATGGTTGACAAGGCTGTAGCTGTCTTAGCAAACCTTGCCACAATTCCAGAAGGCAGAATTGCAATTGGCCAGGAAGGTGGGATTCCTGTTCTAGTTGAAGTTGTTGAGTTGGGTTCTGCTAGAGGAAAGGAGAACGCAGCAGCAGCTCTTCTGCATCTTTGCTTACACAGTAGTAGATTCTTAAGCATGGTGCTCCAACACGGAGCCGTACCACCATTAGTAGCTTTATCACAATCAGGCACACCAAGGGCCAAAGAAAAGGCCCAAGCTCTCCTTAATCAATTTAGAAGTCAAAGACATGGGAATTCTGGGAGGGGCTGA 2484 0.4388 MLKMLVDSISSFLHLSFSGNMTSEPVSKYHHKAEEILKLLKPIIDAFANSELASDEVLSKTSEELGHAVDELKEHVENWHLLSSKVYFVMQVEPLISRIRTSGLKVLQQLKVSKQFPNDELSSEHLENCVQKLKLLGLEENSSVIKEAIMEQLDGAGPSTEILEKIADSLDLRSNEEVLIEAVALEKLKENAEQTEKTAEAEYIDQIIAVITRMHERLVVLKQAQSSSPVPVPADFCCPLSLELMTDPVIVASGQTYERAFIKNWIDLGLTVCPKTHQALAHTNLIPNYTVKALIANWCESNNVSPTLNQASILHGYMESGTTRESPLFPHSRSNLPSSPESARSRSFSSPGNNIPSSGGIQREGTSPVHPRSTSEGSFSGIINGQYMDAARTSPTALDDRSASSDESSVDSIGQPSISPSRRESSGAFSSELSQNHVRAVSDSGAFSDANYQETQGDDSNASQLSTSPGYSRDTSGELNPGPDAAGSAPMPSMQREPEFPPRLMEARSRSQAIWRRPSERLVPRIISSSVEPRVDLSGIEAQVRSLVEGLRSIDLDIQREATSEIRLLAKHNMDNRIAIANCGAINILVDLLQSEDSRIQENAVTALLNLSINDNNKTAIANAGAIEPLIHVLEHGSPEAKENSAATLFSLSVIEENKVNIGRSGAIRPLVDLLGNGTPRGKKDAATALFNLSIFHENKNRIVQAGAVKHLVELMDPAAGMVDKAVAVLANLATIPEGRIAIGQEGGIPVLVEVVELGSARGKENAAAALLHLCLHSSRFLSMVLQHGAVPPLVALSQSGTPRAKEKAQALLNQFRSQRHGNSGRG 827
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g00875 827 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 707 748 IPR000225 GO:0005515
Trre5g00875 827 MobiDBLite consensus disorder prediction 393 435 - -
Trre5g00875 827 Gene3D - 527 822 IPR011989 -
Trre5g00875 827 FunFam RING-type E3 ubiquitin transferase 528 822 - -
Trre5g00875 827 FunFam RING-type E3 ubiquitin transferase 231 305 - -
Trre5g00875 827 PANTHER U BOX DOMAIN-CONTAINING 25 815 - -
Trre5g00875 827 SMART arm_5 696 735 IPR000225 GO:0005515
Trre5g00875 827 SMART arm_5 655 695 IPR000225 GO:0005515
Trre5g00875 827 SMART arm_5 736 776 IPR000225 GO:0005515
Trre5g00875 827 SMART arm_5 614 654 IPR000225 GO:0005515
Trre5g00875 827 SMART arm_5 573 613 IPR000225 GO:0005515
Trre5g00875 827 Coils Coil 175 205 - -
Trre5g00875 827 CDD RING-Ubox_PUB 233 285 IPR045210 -
Trre5g00875 827 ProSiteProfiles U-box domain profile. 231 305 IPR003613 GO:0004842|GO:0016567
Trre5g00875 827 SUPERFAMILY RING/U-box 223 304 - -
Trre5g00875 827 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 666 708 IPR000225 GO:0005515
Trre5g00875 827 SMART Ubox_2 235 298 IPR003613 GO:0004842|GO:0016567
Trre5g00875 827 MobiDBLite consensus disorder prediction 449 475 - -
Trre5g00875 827 MobiDBLite consensus disorder prediction 449 507 - -
Trre5g00875 827 Pfam U-box domain 232 302 IPR003613 GO:0004842|GO:0016567
Trre5g00875 827 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 584 626 IPR000225 GO:0005515
Trre5g00875 827 SUPERFAMILY ARM repeat 544 816 IPR016024 -
Trre5g00875 827 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 211 313 IPR013083 -
Trre5g00875 827 MobiDBLite consensus disorder prediction 324 381 - -
Trre5g00875 827 Pfam Armadillo/beta-catenin-like repeat 575 612 IPR000225 GO:0005515
Trre5g00875 827 Pfam Armadillo/beta-catenin-like repeat 657 694 IPR000225 GO:0005515
Trre5g00875 827 Pfam Armadillo/beta-catenin-like repeat 614 653 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g00875 Trre-Chr5 5942251 5945597 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g00875 192 827 U-box Gene Family AT2G23140 60.736 0.0 721
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g00875 - - tpra:123913325 1505.35