Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g00874 ATGAAGATATCGATGTTGAAAATGCTTGTTGACAGCATATCCTCATTTTTGCATTTATCATTTTCTGGAAATATGACCTCAGAACCAGTCTCAAAATATCACCATAAGGCGGAGGAGATACTTAAGTTATTGAAGCCGATCATTGATGCTTTTGCTAATTCTGAGCTAGCCTCCGACGAAGTGCTTAGTAAAACATCCGAAGAACTTGGTCATGCTGTTGATGAATTAAAGGAGCATGTTGAGAATTGGCACCTATTGTCTAGCAAAGTTTACTTTGTTATGCAAGTTGAACCCTTGATATCTAGGATTCGGACTTCAGGTCTCAAGGTCTTGCAGCAGCTGAAGGTTTCAAAGCAATTTCCCAATGATGAATTGAGTTCTGAACATTTGGAGAACTGTGTTCAGAAACTTAAGCTTTTAGGACTTGAAGAAAACTCATCCGTCATTAAGGAAGCTATTATGGAACAACTGGATGGTGCAGGACCTAGTACAGAGATCCTGGAAAAAATTGCTGATAGCCTGGATCTAAGATCTAACGAGGAGGTTCTGATTGAGGCTGTGGCCCTAGAAAAGTTGAAGGAGAATGCTGAACAGACTGAAAAGACTGCAGAAGCTGAATACATTGATCAAATTATTGCTGTTATAACGCGTATGCATGAGCGCCTTGTTGTGCTTAAGCAAGCCCAAAGTTCCAGTCCTGTTCCAGTACCTGCTGATTTTTGTTGTCCTCTTTCTTTAGAGTTGATGACTGATCCGGTGATCGTGGCTTCAGGGCAAACTTATGAGCGGGCTTTTATCAAGAACTGGATTGATCTTGGTCTTACTGTTTGTCCAAAGACACATCAGGCTCTGGCTCACACCAACCTAATACCTAACTACACGGTAAAGGCACTAATTGCAAACTGGTGTGAATCAAACAATGTGTCACCAACCTTAAATCAAGCATCGATCCTTCATGGGTATATGGAGTCTGGTACAACCAGGGAATCTCCTCTTTTTCCTCATTCCAGGAGTAACCTGCCATCCTCACCCGAGTCCGCTCGTTCTCGTTCTTTTAGTTCGCCAGGTAATAACATACCTTCTTCAGGTGGAATCCAGCGAGAGGGAACATCACCTGTGCACCCTCGTTCAACTTCAGAAGGTTCCTTTAGTGGCATAATTAATGGGCAATATATGGATGCTGCTAGAACATCACCCACGGCTTTAGACGACAGGTCTGCTAGCTCAGATGAAAGCAGTGTCGATTCAATTGGCCAACCATCAATATCACCATCTAGAAGAGAATCTTCCGGTGCCTTCAGCTCCGAACTATCTCAAAACCATGTTAGAGCTGTATCTGATTCTGGTGCATTTTCTGATGCAAATTATCAAGAAACACAAGGTGATGACAGCAATGCTTCTCAGCTGTCAACAAGTCCAGGCTACAGTAGAGATACTTCTGGCGAATTAAATCCAGGACCAGATGCTGCTGGTTCTGCTCCCATGCCATCAATGCAGAGGGAACCTGAGTTCCCACCCCGATTGATGGAGGCAAGGTCTCGGAGCCAAGCTATATGGAGGAGGCCATCAGAAAGGCTGGTTCCTAGGATAATATCTTCTTCTGTTGAACCAAGAGTTGATCTTTCTGGTATTGAGGCACAGGTTCGAAGTTTAGTTGAGGGCTTGAGGAGCATTGATCTTGACATTCAGAGAGAGGCAACTTCAGAAATCCGTCTTCTTGCTAAACACAATATGGATAATCGAATTGCAATTGCAAATTGTGGAGCCATTAACATATTAGTCGACTTACTTCAATCAGAAGATTCAAGGATCCAGGAAAATGCTGTTACAGCGCTTCTTAACTTATCTATCAATGATAACAACAAAACTGCAATTGCAAATGCCGGTGCAATTGAACCTCTGATTCATGTTCTTGAGCACGGGAGCCCAGAAGCGAAGGAGAATTCAGCTGCCACTCTTTTCAGCTTGTCGGTGATTGAGGAAAACAAGGTTAACATAGGGAGATCTGGGGCAATTAGACCACTTGTAGATTTATTAGGGAATGGAACCCCGAGGGGAAAAAAGGATGCTGCCACTGCTTTGTTTAATTTGTCAATATTTCACGAGAACAAGAATCGGATTGTGCAAGCTGGTGCTGTAAAGCACCTTGTGGAGTTGATGGACCCAGCGGCTGGAATGGTTGACAAGGCTGTAGCTGTCTTAGCAAACCTTGCCACAATTCCAGAAGGCAGAATTGCAATTGGCCAGGAAGGTGGGATTCCTGTTCTAGTTGAAGTTGTTGAGTTGGGTTCTGCTAGAGGAAAGGAGAACGCAGCAGCAGCTCTTCTGCATCTTTGCTTACACAGTAGTAGATTCTTAAGCATGGTGCTCCAACACGGAGCCGTACCACCATTAGTAGCTTTATCACAATCAGGCACACCAAGGGCCAAAGAAAAGGCCCAAGCTCTCCTTAATCAATTTAGAAGTCAAAGACATGGGAATTCTGGGAGGGGCTGA 2496 0.4383 MKISMLKMLVDSISSFLHLSFSGNMTSEPVSKYHHKAEEILKLLKPIIDAFANSELASDEVLSKTSEELGHAVDELKEHVENWHLLSSKVYFVMQVEPLISRIRTSGLKVLQQLKVSKQFPNDELSSEHLENCVQKLKLLGLEENSSVIKEAIMEQLDGAGPSTEILEKIADSLDLRSNEEVLIEAVALEKLKENAEQTEKTAEAEYIDQIIAVITRMHERLVVLKQAQSSSPVPVPADFCCPLSLELMTDPVIVASGQTYERAFIKNWIDLGLTVCPKTHQALAHTNLIPNYTVKALIANWCESNNVSPTLNQASILHGYMESGTTRESPLFPHSRSNLPSSPESARSRSFSSPGNNIPSSGGIQREGTSPVHPRSTSEGSFSGIINGQYMDAARTSPTALDDRSASSDESSVDSIGQPSISPSRRESSGAFSSELSQNHVRAVSDSGAFSDANYQETQGDDSNASQLSTSPGYSRDTSGELNPGPDAAGSAPMPSMQREPEFPPRLMEARSRSQAIWRRPSERLVPRIISSSVEPRVDLSGIEAQVRSLVEGLRSIDLDIQREATSEIRLLAKHNMDNRIAIANCGAINILVDLLQSEDSRIQENAVTALLNLSINDNNKTAIANAGAIEPLIHVLEHGSPEAKENSAATLFSLSVIEENKVNIGRSGAIRPLVDLLGNGTPRGKKDAATALFNLSIFHENKNRIVQAGAVKHLVELMDPAAGMVDKAVAVLANLATIPEGRIAIGQEGGIPVLVEVVELGSARGKENAAAALLHLCLHSSRFLSMVLQHGAVPPLVALSQSGTPRAKEKAQALLNQFRSQRHGNSGRG 831
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g00874 831 MobiDBLite consensus disorder prediction 397 439 - -
Trre5g00874 831 FunFam RING-type E3 ubiquitin transferase 532 826 - -
Trre5g00874 831 ProSiteProfiles U-box domain profile. 235 309 IPR003613 GO:0004842|GO:0016567
Trre5g00874 831 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 670 712 IPR000225 GO:0005515
Trre5g00874 831 Coils Coil 179 209 - -
Trre5g00874 831 SUPERFAMILY RING/U-box 227 308 - -
Trre5g00874 831 Gene3D - 531 826 IPR011989 -
Trre5g00874 831 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 588 630 IPR000225 GO:0005515
Trre5g00874 831 FunFam RING-type E3 ubiquitin transferase 235 309 - -
Trre5g00874 831 CDD RING-Ubox_PUB 237 289 IPR045210 -
Trre5g00874 831 MobiDBLite consensus disorder prediction 453 479 - -
Trre5g00874 831 MobiDBLite consensus disorder prediction 453 511 - -
Trre5g00874 831 SMART arm_5 577 617 IPR000225 GO:0005515
Trre5g00874 831 SMART arm_5 740 780 IPR000225 GO:0005515
Trre5g00874 831 SMART arm_5 618 658 IPR000225 GO:0005515
Trre5g00874 831 SMART arm_5 659 699 IPR000225 GO:0005515
Trre5g00874 831 SMART arm_5 700 739 IPR000225 GO:0005515
Trre5g00874 831 Pfam U-box domain 236 306 IPR003613 GO:0004842|GO:0016567
Trre5g00874 831 SUPERFAMILY ARM repeat 548 820 IPR016024 -
Trre5g00874 831 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 215 317 IPR013083 -
Trre5g00874 831 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 711 752 IPR000225 GO:0005515
Trre5g00874 831 Pfam Armadillo/beta-catenin-like repeat 618 657 IPR000225 GO:0005515
Trre5g00874 831 Pfam Armadillo/beta-catenin-like repeat 661 698 IPR000225 GO:0005515
Trre5g00874 831 Pfam Armadillo/beta-catenin-like repeat 579 616 IPR000225 GO:0005515
Trre5g00874 831 PANTHER U BOX DOMAIN-CONTAINING 29 819 - -
Trre5g00874 831 MobiDBLite consensus disorder prediction 328 385 - -
Trre5g00874 831 SMART Ubox_2 239 302 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g00874 Trre-Chr5 5942239 5945597 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g00874 196 831 U-box Gene Family AT2G23140 60.736 0.0 721
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g00874 - - tpra:123913325 1510.74