Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g00872 ATGAAAGTTGACAACATTAATGATGATGTATGTTGGGAGCCTGCAGCGGGGATGTGTTTTTCTTGTTTAGATGAAGTTAAATCTTTTTATGGAGAGTATGCTTTGAAAAAGGGTTTTCGGTGGAAGATTAGAACATCAAGAAAAGGACCGGACGGAGAAATATGCTACTTAATTCTAGCATGCTCAAGAGAGGGGTCTAAAGTCTCAAAGGTTTCGTGTACATCGAAGACACTTCCGGAAAAAGTGAAAAGTTGTCCTGCTAAGATTTGTGTTAAGATGGAAGAAGATGGATTGTGGTACATTAGAAAATTTGAAGCCGACCATTCTCACGAGACCAGCCCTACAAAGGCAAGAAGAAGGGAGAAACAAGATTCAAGCAGGGATTCTACTCCATCATTCTTTTTTCTTCATGAAGTAATTAAGGATTCAAATGGTAGAAGAATATTTGCTGAAGGAAGACAAAGTCTATATGATCATATTGCATTTGGGAAATTGTGTAGTTTGTTATTACAGAATTACTTAGTTTGTGTCCAATAG 537 0.3724 MKVDNINDDVCWEPAAGMCFSCLDEVKSFYGEYALKKGFRWKIRTSRKGPDGEICYLILACSREGSKVSKVSCTSKTLPEKVKSCPAKICVKMEEDGLWYIRKFEADHSHETSPTKARRREKQDSSRDSTPSFFFLHEVIKDSNGRRIFAEGRQSLYDHIAFGKLCSLLLQNYLVCVQ 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g00872 178 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 4 128 - -
Trre5g00872 178 Pfam FAR1 DNA-binding domain 28 112 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g00872 Trre-Chr5 5930996 5934999 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Trre5g00872 FAR1 3.9e-14 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g00872 - - cam:101510307 191.43