LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre5g00865	ATGCCTGCATGCATCAGCATCTTAACTTTGTTGCTTCCTATCGGTGCTTCCACCCTCTTCTTAAGGAGATTCTGTCTGCAAAATAAATATTCTGCTGAAACTCAAGTATATATATTGCAGAAGGAAACATTTCTGGGAATGCCTAAAAGATGTACCTTCTTGATTTCATCTGTGTGTAGGTTACTTGGTCAAGGAACTTTCGGAAAGGTTTACTATGCACGGAGTAGGGTAACTAACCAGAGTGTTGCTATTAAAGCGATTGACAAAGATAAGGTTATGAGAACTGGTCAAGTTGATCGAGTCATGCGCGAAATATATGTTATGAAATTGGCTAGACATCCGAATATTATACAGCTTTTTGAGGTTATGGCAACGAAGAGTAAAATTTACTTTGTTATCGAGTATGCTAAAGGCGGTGAGCTTTTTAACAAGGTGGCTAAAGGAAAACTCAAAGAAGAAGTTGCACACAGATATTTTAAGCAGTTAATCAATGCGGTCGATTTTTGTCACAGTAGAGGCGTGTATCATCGAGACATTAAGCCTGAAAACATTCTATTGGATGAAAATGGCAATTTGAAGGTTTCTGATTTTGGGTTAAGTGCTCTTGTGGAATTAAATCAACAGGATATGATTCTCCGTACGCCTTGTGGCACTCCGGCCTATGTTGCTCCGGAAGTCATCAAAAGAAAAGGGTATGATGGTGCGAAAGCTGATATTTGGTCTTGTGGAATAGTTCTATTTGTTTTATTGGCAGGTTATCTTCCTTTTCATGATTCAAATTTGATAGAGATGTATAGGAAGATAAGCAAAGCAGAATTAAAATGTCCGAGTTGGTTTCGACCGGAAGTGTGCATGCTATTAAGCGAAATATTAGATCCAAAACCCGACACTAGGATTTCCATAGAAAAGATTAAGGAACATTGTTGGTTTAAAAATGGACCAAATGCTAGAAATAAAAAACCAAAAGCGGAAAACAGCAGTGTCTCTTCTTCAGGTACAGTTGTTTCTGACCAAAGTGATGAAAACAAAAACAACAGTCCGGAAGCTGAAGCAAAGGAAGAGTCGGTCGTGCCGATCAGTATAAATGCCTTTGATATCATCTCCCTTTCGGCTAGTTTTGATCTTTCTAGATTCTTTAAAGAAGTTCAGAAAAAAGAAGCGAGGTTTAGTTCGAAACTACCTGCATCAGTCATTATCTCGAAGATGGAAGACATTGCTAAGCAACTGAGGATGAAAATTAAGAAAAAAGCTGCTGGTTTGTTGAAATTAGAGGGATTCGATGAAGGTAGGAAAGGAGTTTTATCTATTGATGCAGAGATCTTTGAGGTTACTCCTAATTTCCATTTAGTTGAGGTGAAAAAATCAAATGGAGATACATTGGAATATCAGAAAATATTGAAAGAGGATATTAGGCCAGGTCTTCAGGATATTGTTTGGGTGTGGCAAACCGACCAACAACTGCAATCACAACAATCAGATCAACAGATACCGATACATGATCAGCAGCAACAACAACCACAGTCGTAA	1527	0.3818	MPACISILTLLLPIGASTLFLRRFCLQNKYSAETQVYILQKETFLGMPKRCTFLISSVCRLLGQGTFGKVYYARSRVTNQSVAIKAIDKDKVMRTGQVDRVMREIYVMKLARHPNIIQLFEVMATKSKIYFVIEYAKGGELFNKVAKGKLKEEVAHRYFKQLINAVDFCHSRGVYHRDIKPENILLDENGNLKVSDFGLSALVELNQQDMILRTPCGTPAYVAPEVIKRKGYDGAKADIWSCGIVLFVLLAGYLPFHDSNLIEMYRKISKAELKCPSWFRPEVCMLLSEILDPKPDTRISIEKIKEHCWFKNGPNARNKKPKAENSSVSSSGTVVSDQSDENKNNSPEAEAKEESVVPISINAFDIISLSASFDLSRFFKEVQKKEARFSSKLPASVIISKMEDIAKQLRMKIKKKAAGLLKLEGFDEGRKGVLSIDAEIFEVTPNFHLVEVKKSNGDTLEYQKILKEDIRPGLQDIVWVWQTDQQLQSQQSDQQIPIHDQQQQQPQS	508

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre5g00865	508	ProSiteProfiles	NAF domain profile.	356	380	IPR018451	GO:0007165
	Trre5g00865	508	FunFam	Non-specific serine/threonine protein kinase	136	317	-	-
	Trre5g00865	508	FunFam	Non-specific serine/threonine protein kinase	356	479	-	-
	Trre5g00865	508	FunFam	Aurora kinase A	53	139	-	-
	Trre5g00865	508	Pfam	NAF domain	358	415	IPR004041	GO:0007165
	Trre5g00865	508	SUPERFAMILY	Protein kinase-like (PK-like)	58	335	IPR011009	-
	Trre5g00865	508	Gene3D	Kinase associated domain 1, KA1	360	480	-	-
	Trre5g00865	508	ProSiteProfiles	Protein kinase domain profile.	56	310	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre5g00865	508	MobiDBLite	consensus disorder prediction	315	352	-	-
	Trre5g00865	508	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	174	186	IPR008271	GO:0004672\|GO:0006468
	Trre5g00865	508	SMART	serkin_6	56	310	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre5g00865	508	PANTHER	CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED	56	474	-	-
	Trre5g00865	508	CDD	CIPK_C	362	475	-	-
	Trre5g00865	508	Gene3D	Transferase(Phosphotransferase) domain 1	143	359	-	-
	Trre5g00865	508	Gene3D	Phosphorylase Kinase; domain 1	56	142	-	-
	Trre5g00865	508	Pfam	Protein kinase domain	60	310	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre5g00865	508	MobiDBLite	consensus disorder prediction	319	342	-	-
	Trre5g00865	508	ProSitePatterns	Protein kinases ATP-binding region signature.	62	85	IPR017441	GO:0005524

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre5g00865	Trre-Chr5	5908709	5910983	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre5g00865	58	485	CBL-interacting serine-threonine protein kinases	AT5G58380	63.265	0.0	588

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CAMK_CAMKL-CHK1	Trre5g00865		Pkinase	3.9e-74	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre5g00865	-		-	gmx:100814847	665.611