Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g00858 ATGCCGGAGATCGAACAAGCACCGGAAGTAACAGCCCTTTTCGGTAAATATGAATTGGGAAGAGTCGTTGGTTGCGGCGCGTTTGCGAAAGTATACTACGCGCGTAACGTGAAAACAGGACAAAGCGTTGCTGTGAAAATTATCAACAAAAAGAAACTCTCCGGTACGGGTCTCGCCGGAAATGTGAAACGAGAAATCACAATTATGAGTCGTCTTCATCATCCTCATATTGTTCGTCTTCACGAAGTTCTCGCCACCAAAACAAAAATCTATTTTATAATGGACTTTGTTCGTGGTGGCGAGCTCTTCGCGAAGATTTCTAAGGGTCGGTTTAGCGAAGATCTTAGTCGGAGATATTTTCATCAATTAATCTCAGCCGTTGGTTATTGTCATTCGCGTGGCGTTTTTCATCGTGATCTTAAACCGGAGAATTTGTTATTAGATGAAAATGGGAATTTAAAAGTTTCGGATTTTGGGTTAAGTGCGGTTCGTGATCAAATCCGACCCGATGGGTTGCTTCATACTCTTTGTGGGACACCTGCTTACGTGGCACCTGAGATTCTCGCTAAGCGAGGATATGATGGCGCCAAAGTTGATGTTTGGTCTTGCGGCGTTGTTTTGTTTGTTCTTGCTGCGGGTTATCTTCCATTTAACGAGCAAAATTTAATGGTTATGTATCGAAAAATTTATAAAGGTGAATTCCGGTGTCCACGTTGGATGTCGACCGATCTACGACGGTTTTTGTCGAAGTTGCTAGACACCAACCCGGAAACTCGAATTACGGTTGATGGTATGACCCGTGATCCATGGTTTAGAAAAGGATATAAACAAATAAAATTTCATGAGGAAGATTATGGATCGGGGTATGAGTTAGGATTCGGGTGTAAGGGTGATGGGTCGGAGGTATTGAATTTGAATGCATTTGATATTATATCATTTTCATCAGGTTTGGATTTATCCGGGTTGTTCGGAGAATTTGATGGGGTGGAGCGGTTTGTTTTACGAGAGTTGCCGGAGAAGATTTTGGAAGTGGTGGAGGAGGTTGGAGCAGCGGAGGGAATGGCATTGAGGTGGAAGAAAGAATGTGGAGTTGAGTTGGAAGGATTGAGTGGTAAATTTGGAATTGAGATTGAGGTTTACCGGTTAACGGCGGAGGTAGCAATGGTTGAGGTTAGAAGGAGAGGAAGTGATGTGGCGGCGTTTTGTAATTTGTGGGATATTAAGCTTAAGCCTCAATTACTACGGGGTGAGGCAACGACGTCGTATCAACATGAATGTGAACCTGAATCGCCGGTTTCTAGTGATTGA 1308 0.435 MPEIEQAPEVTALFGKYELGRVVGCGAFAKVYYARNVKTGQSVAVKIINKKKLSGTGLAGNVKREITIMSRLHHPHIVRLHEVLATKTKIYFIMDFVRGGELFAKISKGRFSEDLSRRYFHQLISAVGYCHSRGVFHRDLKPENLLLDENGNLKVSDFGLSAVRDQIRPDGLLHTLCGTPAYVAPEILAKRGYDGAKVDVWSCGVVLFVLAAGYLPFNEQNLMVMYRKIYKGEFRCPRWMSTDLRRFLSKLLDTNPETRITVDGMTRDPWFRKGYKQIKFHEEDYGSGYELGFGCKGDGSEVLNLNAFDIISFSSGLDLSGLFGEFDGVERFVLRELPEKILEVVEEVGAAEGMALRWKKECGVELEGLSGKFGIEIEVYRLTAEVAMVEVRRRGSDVAAFCNLWDIKLKPQLLRGEATTSYQHECEPESPVSSD 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g00858 435 Pfam NAF domain 304 356 IPR004041 GO:0007165
Trre5g00858 435 SUPERFAMILY Protein kinase-like (PK-like) 14 278 IPR011009 -
Trre5g00858 435 SMART serkin_6 17 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g00858 435 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 12 396 - -
Trre5g00858 435 FunFam Non-specific serine/threonine protein kinase 7 292 - -
Trre5g00858 435 FunFam Non-specific serine/threonine protein kinase 8 96 - -
Trre5g00858 435 ProSiteProfiles NAF domain profile. 300 324 IPR018451 GO:0007165
Trre5g00858 435 ProSitePatterns Protein kinases ATP-binding region signature. 23 46 IPR017441 GO:0005524
Trre5g00858 435 Gene3D Kinase associated domain 1, KA1 301 415 - -
Trre5g00858 435 ProSiteProfiles Protein kinase domain profile. 17 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g00858 435 ProSitePatterns Serine/Threonine protein kinases active-site signature. 135 147 IPR008271 GO:0004672|GO:0006468
Trre5g00858 435 CDD CIPK_C 306 413 - -
Trre5g00858 435 Pfam Protein kinase domain 17 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g00858 435 Gene3D Transferase(Phosphotransferase) domain 1 8 289 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g00858 Trre-Chr5 5873137 5874444 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g00858 1 421 CBL-interacting serine-threonine protein kinases AT2G30360 63.364 0.0 536
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Trre5g00858 Pkinase 4.2e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g00858 - - gsj:114377188 681.019