Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g00850 ATGCAAGATGTTATGGCTGATTATGGTGGTTGGGAGGGTGGTCATGCTACTTTCTATGGTGGGGGTGATGCTTCTGGCACAATGGGAGGAGCATGTGGATATGGAAATTTGTATAGCCAAGGATATGGAACAAACACAGCAGCACTAAGTACTGCTTTATTCAACAATGGTTTAAGCTGTGGATCTTGCTATGAAATGAGATGCAATGATGATCCAAGATGGTGCAAACCTGGTTCAATTATTGTCACTGCTACAAATTTTTGTCCACCAAATCCATCATTGGCTAACAACAATGGTGGTTGGTGTAACCCTCCATTGCAACATTTTGATATGGCTGAACCTGCCTTCCTTCAAATTGCTGAATATAGAGCTGGAATTGTCCCTGTGTCCTTTAGAAGGGTGCCATGTGTCAAGAAGGGAGGAATAAGGTTCACAATCAATGGTCACTCTTACTTCAACCTAGTTTTGGTCACCAATGTGGGTGGTGCTGGGGATGTTCATTCAGTTTCTATTAAAGGATCAAGAACTGGTTGGCAACCCATGTCAAGAAATTGGGGCCAAAATTGGCAAAGTAACTCTTATCTTAATGGACAAAGTCTCTCATTTCAAGTTACAACAAGTGATGGTAGAACTACCACAAGTTTCAATGTGGCACCAGGCAATTGGCAATTTGGTCAAACTTTTCAAGGAGCTCAATTTTAG 702 0.4174 MQDVMADYGGWEGGHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMRCNDDPRWCKPGSIIVTATNFCPPNPSLANNNGGWCNPPLQHFDMAEPAFLQIAEYRAGIVPVSFRRVPCVKKGGIRFTINGHSYFNLVLVTNVGGAGDVHSVSIKGSRTGWQPMSRNWGQNWQSNSYLNGQSLSFQVTTSDGRTTTSFNVAPGNWQFGQTFQGAQF 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g00850 233 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 151 230 IPR007117 -
Trre5g00850 233 Pfam Lytic transglycolase 46 131 IPR009009 -
Trre5g00850 233 SUPERFAMILY PHL pollen allergen 138 230 IPR036749 -
Trre5g00850 233 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 29 141 IPR007112 -
Trre5g00850 233 PANTHER EXPANSIN-A15 7 233 IPR002963 GO:0009664
Trre5g00850 233 Pfam Expansin C-terminal domain 142 219 IPR007117 -
Trre5g00850 233 PRINTS Expansin signature 116 129 IPR002963 GO:0009664
Trre5g00850 233 PRINTS Expansin signature 216 232 IPR002963 GO:0009664
Trre5g00850 233 PRINTS Expansin signature 140 152 IPR002963 GO:0009664
Trre5g00850 233 PRINTS Expansin signature 152 173 IPR002963 GO:0009664
Trre5g00850 233 PRINTS Expansin signature 80 90 IPR002963 GO:0009664
Trre5g00850 233 PRINTS Expansin signature 99 116 IPR002963 GO:0009664
Trre5g00850 233 PRINTS Expansin signature 41 55 IPR002963 GO:0009664
Trre5g00850 233 PRINTS Expansin signature 187 208 IPR002963 GO:0009664
Trre5g00850 233 PRINTS Expansin signature 68 79 IPR002963 GO:0009664
Trre5g00850 233 FunFam Expansin 141 233 - -
Trre5g00850 233 FunFam Expansin 1 137 - -
Trre5g00850 233 CDD DPBB_EXPA_N 10 136 - -
Trre5g00850 233 SUPERFAMILY Barwin-like endoglucanases 10 159 IPR036908 -
Trre5g00850 233 Gene3D - 1 136 IPR036908 -
Trre5g00850 233 PRINTS Expansin/Lol pI family signature 50 68 IPR007118 GO:0005576
Trre5g00850 233 PRINTS Expansin/Lol pI family signature 10 25 IPR007118 GO:0005576
Trre5g00850 233 PRINTS Expansin/Lol pI family signature 178 192 IPR007118 GO:0005576
Trre5g00850 233 PRINTS Expansin/Lol pI family signature 124 140 IPR007118 GO:0005576
Trre5g00850 233 PRINTS Expansin/Lol pI family signature 216 230 IPR007118 GO:0005576
Trre5g00850 233 PRINTS Expansin/Lol pI family signature 28 46 IPR007118 GO:0005576
Trre5g00850 233 Gene3D - 140 233 IPR036749 -
Trre5g00850 233 SMART dpbb_1 46 131 IPR007112 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g00850 Trre-Chr5 5797867 5799835 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g00850 1 233 Expansin Gene Family AT2G40610 83.333 4.42e-148 411
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g00850 - K20628 gmx:100499976 459.914