Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g00846 ATGGCTAGGAGGAAAGTCAAGCTTGCCTACATAATCAATGACTCAAAGAGGAGGATAACATACAACAAAAGAAAAAAGGGTTTAATCAAAAAGGTTGATGAAATAACCACACTCTGCGGAATCGAGGCATGTGCAATAATCTTCGGTGAAAATAATGCTCAACCAGAGATTTGGCCATCACCGGTGGGAGTCCATACCGTGCTGTCAAGGTTTAGGGGATTGCCTGAAACGGAACAAAGCAGAAAGATGCAGAATCAAGAGAGTTTCTTGAGAGAAAAGATACAAAAGGGACAAGAACAATTGAACAAACTAAGGAATGAAAACAGAAGAAAGGAACTGACCCAACTCATGTTTCAATGCATTAATGCTAACCAGATTGCTGACAATGTTGGCATGAATGATCTCAATGGTCTCTCTTGGATGATTGATCAAAATATGAAACATATCCAAAGGCGTATGGAAGAGATTCGAGCTGCACCGGTGGTCGAAAGGCGTATGGAAGAGACGCGAGCTGCAGCTGTCGTCGAAAATCGTGCTGAAAATGTGATTGGAGCTGCCCCGGTGGTCGAAAATCGTGCTGAAAATTTGATTGGAGCTGCCCCGGTGGTTGAAAACCGTGCTGAAAATGTGATTGGAGCTGCCCCGGTGGTCGAAAATCGTGCTGAAAATGTGATTGGAAGGGAGCTGGGGATGGAGAACAATGTTGGTGCAATGCAGCCACAACCTTGGTCATTGGACTTCATGACCAACTACAACAATTTTGGTGATCTGTCGCCATTTGATGAAAATGGTAACAATGCACCAAATGGTTTCTGGCCTTAA 822 0.438 MARRKVKLAYIINDSKRRITYNKRKKGLIKKVDEITTLCGIEACAIIFGENNAQPEIWPSPVGVHTVLSRFRGLPETEQSRKMQNQESFLREKIQKGQEQLNKLRNENRRKELTQLMFQCINANQIADNVGMNDLNGLSWMIDQNMKHIQRRMEEIRAAPVVERRMEETRAAAVVENRAENVIGAAPVVENRAENLIGAAPVVENRAENVIGAAPVVENRAENVIGRELGMENNVGAMQPQPWSLDFMTNYNNFGDLSPFDENGNNAPNGFWP 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g00846 273 Gene3D - 13 97 IPR036879 GO:0003677|GO:0046983
Trre5g00846 273 CDD MADS_SRF_like 2 83 IPR033897 GO:0000981|GO:0000987|GO:0045944
Trre5g00846 273 ProSiteProfiles MADS-box domain profile. 1 52 IPR002100 GO:0003677|GO:0046983
Trre5g00846 273 SUPERFAMILY SRF-like 3 95 IPR036879 GO:0003677|GO:0046983
Trre5g00846 273 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Trre5g00846 273 PANTHER MADS BOX PROTEIN 3 154 - -
Trre5g00846 273 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 52 IPR002100 GO:0003677|GO:0046983
Trre5g00846 273 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Trre5g00846 273 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Trre5g00846 273 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Trre5g00846 273 Coils Coil 87 114 - -
Trre5g00846 273 FunFam agamous-like MADS-box protein AGL80 13 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g00846 Trre-Chr5 5770561 5771536 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g00846 1 157 Type I MADS-box Gene Family AT5G48670 50.955 2.69e-46 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Trre5g00846 SRF-TF 1.7e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g00846 - - tpra:123915093 249.21