Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g00840 ATGGACAAAGTTATATCAAATTGGACAATGGAATTTCTCCTTCAAAGCTTCGTTCCCGATTCAATTATTCAAAAAACCCTAACCGTTCTTCCACATTCCGCCGCCGATTCTCGTCTCAAAATAGCACTTCTCCTCCGCACTCTCCAAACTTCCCTCCTCAACGCTTCTCTCTCCGAAACCTCTCTCGAAATCCTCGAACACCTCGAAAATCTTTACCACAACGACGCCATTCCAATCTTGGATGCAATGCGCAGTGCTTACTGCGCTATTGCGGTTGAAAGTACTGTTAAGTATCTAATTACTTGTCCTGAAAGTCCCTCCGGTGAGTACTTTTTTGCTGTCCGACGGATCTGGCGTGAAAGGGTTGATAAATTGTCGGAGGAAGGACGGAGGAGTGAGCTTCTGTCTGATGAGTTGGTTCAGTGGGGTCAAGAAGTTGAAGCTGCGCTTTGGGATGCTACGGTTTCGGAGAGGCTTTCTGGGTTGAATACAAGGAGAGATGCGATGAATGAAATGAAGAGATTTTTGAAGGAAGCGTGGGGAGGTATTGGACTTTCGTATATTGATTCGATGGCGATGATTTCTAATGGGAATAGTTTGCGCACTGAAGGTGTTTGTGAAATTGCTTCGGGTAGTGAAGTGTCGAAGAAGAGTGATGGAAGGTTAGAAGGTTTGGGAAAGGAGAAAATGAACTCTGTTGGTGATGTTGAGAATAAAAATGAGAATGAGAATGTGAATGATGATGGTAATCATGATAGTGATGTAGCAACAATGAGTGAAAATCATGCCAATGAGCAATTGGAAGAGAGAGTTGGTACTTCTTATGATGCAAATCAGGAAGTGGGTGGGTGTGATTCTTCAAAGGGAGATAAAGAAATCCGGAAAGACAATCATAAACTCAAACGCAAGCACTCTGCAATTCGAACATATCATACGGGAGTTAGAATCTCTAGTGCCGAGGAAGCACCTGAGGAAGCGAAAGCAACAAATTTGTCGTGTAAATATGAAAGCTTGCCGAGTGGTGAAGTAAAGAAAGTCCGGGAATCCCTTAGAACAAGTTCTATGGAGTTAAAAGCAATGGTCAAGGATCCTCTTCCTGATGCATTGCATGCATCTGAAGTTGTTAGATCCAATTTGGCTACAAAAGATATAAATCGCAGGCCACCCATTGAAAGCCAGAGTGGACATGTAGATGCACCAGAATCAACTGCATGCAAGACTATTGTACTATATCAGCCTAAAGACGTCATTCCTGGGAACAAGTCTTCTGTTCATGGTAGTAGTAGTCGTCGCCCCAAGCTAATGGAACGGGGAAGTTCTGCTCATACTTTTGAGTGGGATGATTCAATAGAGAACTTACCGCAGGTAAGACATCCAAAAAAGAAGAAAAGGAGATGGACTTCATTGGAAGAGGATACCCTAAGGGCTGGTGTAAAAATGTTTGGAGAAGGAAGCTGGAGTGTAATCCGAGAATATTACAGCAACATATTTGAATTTAGAAGTGCAGGTGATCTGAAGGACAAGTGGAGAAATTTGATTCGGTGA 1545 0.4298 MDKVISNWTMEFLLQSFVPDSIIQKTLTVLPHSAADSRLKIALLLRTLQTSLLNASLSETSLEILEHLENLYHNDAIPILDAMRSAYCAIAVESTVKYLITCPESPSGEYFFAVRRIWRERVDKLSEEGRRSELLSDELVQWGQEVEAALWDATVSERLSGLNTRRDAMNEMKRFLKEAWGGIGLSYIDSMAMISNGNSLRTEGVCEIASGSEVSKKSDGRLEGLGKEKMNSVGDVENKNENENVNDDGNHDSDVATMSENHANEQLEERVGTSYDANQEVGGCDSSKGDKEIRKDNHKLKRKHSAIRTYHTGVRISSAEEAPEEAKATNLSCKYESLPSGEVKKVRESLRTSSMELKAMVKDPLPDALHASEVVRSNLATKDINRRPPIESQSGHVDAPESTACKTIVLYQPKDVIPGNKSSVHGSSSRRPKLMERGSSAHTFEWDDSIENLPQVRHPKKKKRRWTSLEEDTLRAGVKMFGEGSWSVIREYYSNIFEFRSAGDLKDKWRNLIR 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g00840 514 PANTHER MYB TRANSCRIPTION FACTOR 1 514 - -
Trre5g00840 514 SUPERFAMILY Homeodomain-like 460 513 IPR009057 -
Trre5g00840 514 CDD SANT_TRF 464 514 - -
Trre5g00840 514 Pfam Myb-like DNA-binding domain 463 512 IPR001005 -
Trre5g00840 514 SMART sant 462 514 IPR001005 -
Trre5g00840 514 Gene3D - 466 514 - -
Trre5g00840 514 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 458 514 IPR017930 -
Trre5g00840 514 ProSiteProfiles Myb-like domain profile. 458 513 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g00840 Trre-Chr5 5744854 5748111 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g00840 466 513 Single Myb Histone (SMH) Gene Family AT1G15720 54.167 6.31e-07 49.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Trre5g00840 Myb_DNA-binding 2.7e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g00840 - K11111 tpra:123916300 813.527
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g00840 5 5744854 5748111 Trre5g00840 5 5744854 5748111 ECH