Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g00838 ATGGAAACACAAATGCAAGATCCACCATCAAACTCAAACTCTATTCCCAATGTCACATCATCATCAACTCCTTCTTCCAAAATCTTCATCCGCGGCACCGTTAACGGTGTTTCCACCACCGCATCTGTCGCCGCCGAATCCCACTCACACCACCGTAGATCGCACTCAGAAATCAACTACCGTCTTCCCGACGACATGATGGACCTCTCTCCTTCAGATCCATTAAACGGCGGAGGATCTTCCACAGCGAGCTTTGAAGAAATCGGATCCGAAGATGACCTGTTTTTCACCTACATTGACGTCGAGAAGCTCGGAGGTGTTACCAACGGTTTGAATCGTGGTGGAAATGGATCGGATCAGAACGGTTACGGTAACAGTAACGGTAACGGTGTTGGAACGAGCGGTAATAACGACGGAGAAAAGAGTCCGAACGCTGCTACTACGCCGAGAACGAGACATAGACATAGTTGCTCCGTTGATGGTTCAACGTCGACGAGTATGTTTGGAGAGATCATGGATGCAAAGAAAGCTATGCCTCCTGATAAACTCGCTGAGCTTTGGACTATTGATCCAAAGCGTGCTAAGAGAATACTTGCAAACCGGCAATCTGCTGCACGGTCAAAAGAGAGAAAGGCCCGCTATATACAAGAACTTGAGCGCAAGGTTCAAACCCTTCAGACGGAAGCCACAACTCTCTCTGCTCAATTGACACTATATCAGAGGGACACAAGTGGTTTGAGTAATGAAAATACCGAGCTTAAGATCCGGCTGCAATCCATGGAACAACAGGCACACCTTCGAGATGCTCTTAACGATGCATTGATGAAGGAAGTTGAGAGGCTTAAGATTGCTACTGGGGAGGCAATGAACCCCTCTGAATCTTTTAATATGGGAATGCACCAGATGCAATTTGGAGGGTCAAATTTCTTTTCAATGCCGCAACATTCCGGTCCTTCAGGTCACCACCAGGACATACAATTTCCTCAATTTGGTCACTCCCCATCTAACATGCCGAATCATCAGATGCAACAAACCAATTCTCACCAAATGTCGGACATGTTGCAAAATGATCAGCTCGGTCGTTTGCAGGGACTTGACATTAGTAGCAAAGGATCAACCCTCGTGAAGTCTGAAGGTCCGTCAATATCTGCAAGTGAGAGTAGCACTACATTTTGA 1176 0.4677 METQMQDPPSNSNSIPNVTSSSTPSSKIFIRGTVNGVSTTASVAAESHSHHRRSHSEINYRLPDDMMDLSPSDPLNGGGSSTASFEEIGSEDDLFFTYIDVEKLGGVTNGLNRGGNGSDQNGYGNSNGNGVGTSGNNDGEKSPNAATTPRTRHRHSCSVDGSTSTSMFGEIMDAKKAMPPDKLAELWTIDPKRAKRILANRQSAARSKERKARYIQELERKVQTLQTEATTLSAQLTLYQRDTSGLSNENTELKIRLQSMEQQAHLRDALNDALMKEVERLKIATGEAMNPSESFNMGMHQMQFGGSNFFSMPQHSGPSGHHQDIQFPQFGHSPSNMPNHQMQQTNSHQMSDMLQNDQLGRLQGLDISSKGSTLVKSEGPSISASESSTTF 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g00838 391 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 190 253 IPR004827 GO:0003700|GO:0006355
Trre5g00838 391 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 7 368 - -
Trre5g00838 391 MobiDBLite consensus disorder prediction 44 84 - -
Trre5g00838 391 SMART brlzneu 188 252 IPR004827 GO:0003700|GO:0006355
Trre5g00838 391 CDD bZIP_plant_RF2 193 242 IPR044759 GO:0003700|GO:0006355
Trre5g00838 391 Gene3D - 191 244 - -
Trre5g00838 391 MobiDBLite consensus disorder prediction 311 349 - -
Trre5g00838 391 MobiDBLite consensus disorder prediction 46 62 - -
Trre5g00838 391 FunFam probable transcription factor PosF21 191 244 - -
Trre5g00838 391 Coils Coil 243 263 - -
Trre5g00838 391 MobiDBLite consensus disorder prediction 111 164 - -
Trre5g00838 391 MobiDBLite consensus disorder prediction 1 26 - -
Trre5g00838 391 SUPERFAMILY Leucine zipper domain 192 243 IPR046347 GO:0003700|GO:0006355
Trre5g00838 391 Coils Coil 208 235 - -
Trre5g00838 391 MobiDBLite consensus disorder prediction 370 391 - -
Trre5g00838 391 Pfam bZIP transcription factor 192 249 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g00838 Trre-Chr5 5734290 5736712 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g00838 5 391 bZIP Transcription Factor Family AT2G40620 46.047 4.99e-98 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Trre5g00838 bZIP_1 1.4e-08 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g00838 - - gmx:100775607 527.324
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g00838 5 5734290 5736712 Trre5g00838 5 5734290 5736712 ECH
Trre5g00838 5 5734290 5736712 Trre9g03941 9 47451414 47453955 PCT