Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g00828 ATGAGTTACACTACTTGTTTTCTTTGGTTACTCCCTCAGTCCTTTTGGCCTCTTTTCCTTGTCATATGTTTTGGTTCTATGATAATCAAAATCATAACATACCAGAACCCTAACAAACCTAAACTTCCACCAGGTCCCAAACCATGGCCTATAGTTGGTAATCTCCCTGAAATGTTCGCAAACAAACCTACAACTAGGTGGATACATAAAATGATGGAAGAATTGAACACCGAAATAGCATGTATCCGCCTAGGAAATGTCCATCTTATCCCGGTTACTTGTCCGGCCATTGCCCGCGAATTCTTGAGAAAACATGACGCTGATTTTGCATCAAGACCTATAAGTGTGGTCAGTGATATTATCTCCAATGGCTACATGACCTCAATTCTTGCACCCTATGGCGAACAATGGAAAAAGATGAAGAAAATTATTGTTAAAGATTTGTTCTCTCCACGGAGACATCAATGGCTTCAAGACAAACGGAACGAAGAAGCAGATAACCTTATGTTTTATGTGTACAACAAATGCAAGAATGGTGGCCTTGTGAATGTTAGGATTGCTACTCAACATTATTGTGGCAATGTGTATAGGAAATTTTTTTTTAATAGAAGGCACTTTGGAAATGGTATGAAGGATGGAGGGCCTGGTGTTGAGGAAGTTGAACATGTTGATGCTGTTTTCATATTGCTTAACTATGTTTTTGCTTTCTCTACATCTGATTATATACCATGGTTGAGGTTACTTGACTTAGATGGCCATAAGGGCAAGGTAAAAAATGCAATGAGGATAATGAACAAGTATCATGATTCCATCATTGAAGAGAGAACCAAACAGTGGAATGATGGATTGAAGAATGTTGAAGAGGACTTGCTAGATGTTTTGATCTCCCTCAGAGATGTCAACAATAATCCATTATTGACAACAAAAGAAATCAAGGCACAAGTCATTGAATTGATGATGGCAATGCTAGATAATCCATCAAACGCAGTTGAATGGACATTAGCTGAAATGATAAATCAACCTGAGTTACTACAACGAGCCACAGAGGAATTGGATAATGTTGTTGGTAAACAAAGACTAGTTCAAGAATCAGATATTCCAAATCTTAACTATGTGAAAGCTTGTGCAAGAGAAGCTTTTCGCCTTCATCCCATAACAGCTTTCAATGCTCCTCATGTCGCTATGAATGATACAATGGTTGGAAATTATTTGATACCAAAGGGTAGCCATATATTGCTTGGAAGAAGTGGTCTTGGGACAAACCCAAAAGTTTGGAGTGAACCTTATAAATTTAAACCAGAACGTCATCTCAAGAATGATGAGTCTAATGTAACTTTGACAGAGCAAGATTTAAAGTTCATATCCTTCGGTACCGGAAGGCGCGGTTGTCCGGGTGTCGTGCTTGGCTCCACAATGACTATATTGCTATTAGCTAGGTTGCTCCATGGCTTCACTTGGAGTGCACCTTCTAATATATCAAAAATTAATTGTGTCAAATCTAATAGTGTTATGTTTCTTGATGAGCCACTTACGGTTGTAGCAAAGCCACGATTAGCAGTGGAATTGTACAACTTTTCAAGTAAAGCTAAGGAAGCTAAATAA 1602 0.3839 MSYTTCFLWLLPQSFWPLFLVICFGSMIIKIITYQNPNKPKLPPGPKPWPIVGNLPEMFANKPTTRWIHKMMEELNTEIACIRLGNVHLIPVTCPAIAREFLRKHDADFASRPISVVSDIISNGYMTSILAPYGEQWKKMKKIIVKDLFSPRRHQWLQDKRNEEADNLMFYVYNKCKNGGLVNVRIATQHYCGNVYRKFFFNRRHFGNGMKDGGPGVEEVEHVDAVFILLNYVFAFSTSDYIPWLRLLDLDGHKGKVKNAMRIMNKYHDSIIEERTKQWNDGLKNVEEDLLDVLISLRDVNNNPLLTTKEIKAQVIELMMAMLDNPSNAVEWTLAEMINQPELLQRATEELDNVVGKQRLVQESDIPNLNYVKACAREAFRLHPITAFNAPHVAMNDTMVGNYLIPKGSHILLGRSGLGTNPKVWSEPYKFKPERHLKNDESNVTLTEQDLKFISFGTGRRGCPGVVLGSTMTILLLARLLHGFTWSAPSNISKINCVKSNSVMFLDEPLTVVAKPRLAVELYNFSSKAKEAK 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g00828 533 CDD CYP79 77 518 - -
Trre5g00828 533 SUPERFAMILY Cytochrome P450 38 517 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre5g00828 533 Pfam Cytochrome P450 43 508 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre5g00828 533 FunFam Cytochrome P450 9 35 521 - -
Trre5g00828 533 Gene3D Cytochrome P450 36 524 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre5g00828 533 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 456 465 IPR017972 GO:0005506|GO:0016705
Trre5g00828 533 PANTHER CYTOCHROME P450 98A9 26 524 - -
Trre5g00828 533 PRINTS E-class P450 group I signature 453 463 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre5g00828 533 PRINTS E-class P450 group I signature 310 327 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre5g00828 533 PRINTS E-class P450 group I signature 97 118 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre5g00828 533 PRINTS E-class P450 group I signature 373 391 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre5g00828 533 PRINTS E-class P450 group I signature 330 356 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre5g00828 533 PRINTS E-class P450 group I signature 414 438 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre5g00828 533 PRINTS E-class P450 group I signature 463 486 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g00828 Trre-Chr5 5639779 5641601 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g00828 2 523 Cytochrome P450 AT4G39950 53.920 0.0 600
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g00828 - K12153 gmx:100787378 750.74