Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g00827 ATGAGTTACACTACTTGTTTTCTTTGGCTACTCCCTCAGTCCATTTGGCCTCTTTTTCATATTATATTTATTGGCTTTATGGTAATAATCAAAACCATAAGAAAAAGATCCCAGAATCCTAACAAATATACACTGCCACCAGGTCCCAAACCATGGCCAATAGTTGGTAATCTTCCTGAAATGCTTGCAAACAATTCTCCAAATAGATGGATACACAAAATAATGGAAGAAATGAACACTGAAATAGCATGTATCCGTCTAGGAAATGTCCATGTTATCACTATTACTTGTCCCACCATTGCATGTGAATTCTTGAAAAAACATGATGCTGATTTTGCATCAAGACCATTAAGCATGGCCAGTGATATCATCTCCAATGGTTACTTGACATCAGTTCTTGTACCATATGGAGAACAATGGAAAAAGATGAAGAAAATTATTGTTAAAGATTTGTTCTCTCCGCGGAGACATCAATGGCTTCAAGACAAACGGAACGAAGAAGCAGATAATCTTATGTTTTATGTGTACAACAAATGCAACAATGGTGGCCTTGTGAATGTTAGGATTGCTACTCAACATTATTGTGGCAATGTGTATAGGAAATGTTTTTTTAATACAAGGCACTTTGGAAATGGTATGAAGGATGGAGGGCCTGCTGTTGAGGAAGTTGAACATGTTGAGGCTGCTTTTATATTGCTTAACTATGTTTTTAATTTCTCTATATCTGATTATATGCCATGCTTGAGGCTATTTGACTTAGATGGCCATAAGGGGAAGGTAAAAAATGCAATGAGGATAATGAACAAGTATCATGATTCCATCATTGATGAGAGAATCAAACAGTGGAATGATGGATTAAAGAATGTTGAAGAGGACTTGCTAGATGTTTTGATCTCCCTCAAAGATGTCAACAATAATCCATTATTGACAACAAAAGAAATCAAGGCACAAATTATTGAATTGATGATGGCATTGGTAGACAATCCATCAAACGCAGTTGAATGGACATTAGCTGAAATGATAAATCAACCTGAGTTACTACAACGAGCCACAGAGGAATTGGATAATGTTGTTGGTAAACAAAGACTAGTTCAAGAATCAGATATTCCAAATCTTAACTATGTGAAAGCTTGTGCAAGAGAAGCTTTTCGCCTTCATCCCATAACAGCATTCAATGTTCCCCATGTCTCTATGAATGATACAATAGTTGGAAATTATTTAATACCAAAGGGTAGCCATATATTGCTTGGAAGAAGTGGTCTTGGGACAAACCCAAATGTTTGGAGTGAACCTTACAAATTCAAACCAGAACGTCATCTCAAGAATGACGGGTCAAATATAACTTTGACAGAGCCAGATTTAAAGTTCATAACCTTTGGTACCGGAAGGCGAGGTTGTCCGGGTGTCATGCTTGGCTCCACAATGACTATATTGCTATTAGCTAGGTTGCTCCATGGCTTCACTTGGAATGCACCTTCTAATATATCAAGAATCAATGTTGTTGAGTCCAATAGTGTTATGTTTCTTGATGAGCCACTGACGGTTGTAGCAAAGCCACGATTAGCAGTGGAATTGTACAACTTTTCAAGTAAAGCTAAGGAAGCTAAATAA 1611 0.3706 MSYTTCFLWLLPQSIWPLFHIIFIGFMVIIKTIRKRSQNPNKYTLPPGPKPWPIVGNLPEMLANNSPNRWIHKIMEEMNTEIACIRLGNVHVITITCPTIACEFLKKHDADFASRPLSMASDIISNGYLTSVLVPYGEQWKKMKKIIVKDLFSPRRHQWLQDKRNEEADNLMFYVYNKCNNGGLVNVRIATQHYCGNVYRKCFFNTRHFGNGMKDGGPAVEEVEHVEAAFILLNYVFNFSISDYMPCLRLFDLDGHKGKVKNAMRIMNKYHDSIIDERIKQWNDGLKNVEEDLLDVLISLKDVNNNPLLTTKEIKAQIIELMMALVDNPSNAVEWTLAEMINQPELLQRATEELDNVVGKQRLVQESDIPNLNYVKACAREAFRLHPITAFNVPHVSMNDTIVGNYLIPKGSHILLGRSGLGTNPNVWSEPYKFKPERHLKNDGSNITLTEPDLKFITFGTGRRGCPGVMLGSTMTILLLARLLHGFTWNAPSNISRINVVESNSVMFLDEPLTVVAKPRLAVELYNFSSKAKEAK 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g00827 536 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 459 468 IPR017972 GO:0005506|GO:0016705
Trre5g00827 536 FunFam Cytochrome P450 9 38 524 - -
Trre5g00827 536 Gene3D Cytochrome P450 39 527 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre5g00827 536 CDD CYP79 80 521 - -
Trre5g00827 536 SUPERFAMILY Cytochrome P450 41 520 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre5g00827 536 PANTHER CYTOCHROME P450 98A9 16 527 - -
Trre5g00827 536 Pfam Cytochrome P450 46 510 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre5g00827 536 PRINTS E-class P450 group I signature 456 466 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre5g00827 536 PRINTS E-class P450 group I signature 333 359 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre5g00827 536 PRINTS E-class P450 group I signature 417 441 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre5g00827 536 PRINTS E-class P450 group I signature 466 489 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre5g00827 536 PRINTS E-class P450 group I signature 376 394 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre5g00827 536 PRINTS E-class P450 group I signature 100 121 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g00827 Trre-Chr5 5632158 5634252 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g00827 27 526 Cytochrome P450 AT4G39950 55.666 0.0 595
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g00827 - K12153 gmx:100787378 732.635