Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g00824 ATGGGTTCTGACATTGGTATCGTGAATGGTTCGTGTGTTCATGAATGGAAGAAAGGTTGGCCTCTACGATCTGGTGGATTTGCTCAACTCTGCTTCAAGTGCGGATTTTTGGAGGAATGGAAGTTTGACATCATTGACTCATTATCTGCCTATGAGAATTCAGTTTTCTGTAATAAATTCCACCGTCAACAAACCGGTTGGCGGGAGTGTAACTTTTGCAACAAGCCTATTCACTGTGGATGCGTCGTATCTAGATCTCTGTTCGAGTATCTTGACTTCGGTGGTATAGGTTGTGTTAGCTGTGTAAATACTTCCCAACATAATATGATTCGTAATACTGAAACTCCTAAATGGCCCGTTTCATTGACCCAAAATAATGCAAGGGATATGAATTCTGCTCATTTTGACGGCAGACTGTTTACGACTAATGTTGATGAAGGAAAGCTTATGCAATTATGCAGAGTCGTTGAAGCTAGTGAATCCATCCATATGAATCATGCTTCGAGAGACAACATTCTTACACCTAACGGGAAAAACAATCAAGAAGTTAAGCCTTCATTCAGGGAAGGGAATACTAGTTTTTCAAATGTGATTAAACCGTCTGTTCAATCATTAACTTTTTCTACGTTAGAAAATAATAGACCAACATGGGAGATGAAAAACATGCACGAATCAAATGCAAAGCCGTCTTTGAATATGTGTTTGGGAAACCCGTCAGGGAACAACTCTTTCCCAACTTCTGCTGGAGAGAATATAGAAGGAAAAATGTCTCCTACCTTTCATCAAGGGCCGAGATCTCGCCCTATACTGCCCAAACTTTTGAAGACTGGCCTTACCATGAATGGAGGAGAAACTGAAAAAGGGACAACTTCTCAACCACGTATTGCTCGGCCTCCTGGGGATGGGAGGGGCAAAAATCAGTTACTTCCTAGATATTGGCCTAGGATTACCGATCAGGAGCTGGAGCGTTTGTCTGGAGATTTGAAATCAACTGTAGTTCCTTTGTTTGAGAAAGTGTTGAGTGCTAGTGATGCAGGTCGAATTGGTCGTCTTGTTCTCCCAAAAGCCTGTGCTGAGGCTTATTTTCCTCATATTTCACATTCTGAAGGCCTTCCTTTGCGGGTCCAAGATGTAAAGGGAAATGAATGGACTTTTCAGTTTAGATTTTGGCCTAATAATAACAGCAGGATGTATGTATTGGAGGGTGTCACCCCTTGCATACAGGCCATGGAGTTACGTGCTGGTGATACCGTTACATTTAGTCGGATAGATCCTGGGGGAAAACTTGTTATAGGTTTCAGAAAGTCATCAAATTCCACAGATACACAGGATACTTCTCCATCTGCACATTCTAACGGCGTTTCTGCAAAGGGAGCTACCTTTTCTGGTGGAACTGATAATCTTCCATCGAGAAGTAATTGTGGTGATTTTCTCCGTTCGCCAAAAGGGAACGGGGAACTTCGCTTAAATGGACATCCTGAATCTCCGCATTTGAGTACTGGAGCTGCTGATTTGCTTAAAACTGAAAATCGTGAGATGACAATTAATAATTCACTAGACCAAAAAATTTCAGCTTTAGAGAAGAAGAGGACTCGGAATATTGGCCTTAAAAGTAAGAGATTGCTTATTGGTAATGACGATTCTATGGAGTTGAGACTTACATGGGAAGAAGCGCAGGACTTGCTTCGTCCACCGCCTAGTGTGAATCCAAGCATTGTCACAATTGAAGACCAAGTATTTGAAGAATACGATGAGCCCCCGGTTTTTGGAAAGAGAACAATATTCAGCGCCTCTTCATCTGGGATGAAGGAACAATGGGCTCAATGCGATGATTGTTCTAAATGGAGAAAGTTGCCGGTTGATGCCCTTCTTCCTCCCAAGTGGACATGTTCTGAAAATGATTGGGATACAAGCAGATCTTCATGTTCTGCACCAGAGGAGCTGAGCTCAAGGGAATTAGAAAATCTTATGAAAACCAGCAAAGATTTTAAGAAGCGACGGATTGTAGAAAACAACAAGTTGATCCAGGAACACGAGCCTTCTGGCTTAGATGCTCTCGCCAGTTTAGCAGTCATGGGAGAAAATCTCATTGACCCTAATGACTCGTCAGCCGGAGCCACCACTAAACATCCTAGACATCGCCCGGGCTGTTCTTGTATTGTGTGCATTCAGCCCCCGAGCGGAAAAGGAAGACACAAGCCAACATGTACTTGCAACGTGTGCACGACTGTGAAGCGTCGGTTCAAAACTCTTATGCTACGCAAGAAGAAACGCCAGTCGGAGCGCGAAGCAGATGCCGCTGCCAAGAGAGAACAAATTCACAAAAGAGACGACAATTTAGATACCGATACCAATGGTGGAGCATCAAGAGATGATGCAAATCCTTTGGAAAAAGAGGGAGGTTTAAATAGAAGCCAAACCGAGGTAGGCGAGTCCAGTGCTGGAAAGATAGATCTGAATAGTGATCCAAACCGCGAAGACTCACAATTGGATAATATTGCAAAACTTCGTCGTCAACTATCGGAACGGATGAATATGAACCAAAATGGTGGTGTAAGAACCATTAATACTGAAATGCAGGAAGGTCAGCAGCATTCTTCTTTGGTCAATCAATCTAATGGTGAAGATAAGAGAAACTTGTCTGATGAAAGATGCATTGCATCCATTAACTTGAACAAAGAAAGAAGAGATGAAGTATACAGTCAATCAAATGAAAATCAAAACAATATGTCTTAA 2736 0.424 MGSDIGIVNGSCVHEWKKGWPLRSGGFAQLCFKCGFLEEWKFDIIDSLSAYENSVFCNKFHRQQTGWRECNFCNKPIHCGCVVSRSLFEYLDFGGIGCVSCVNTSQHNMIRNTETPKWPVSLTQNNARDMNSAHFDGRLFTTNVDEGKLMQLCRVVEASESIHMNHASRDNILTPNGKNNQEVKPSFREGNTSFSNVIKPSVQSLTFSTLENNRPTWEMKNMHESNAKPSLNMCLGNPSGNNSFPTSAGENIEGKMSPTFHQGPRSRPILPKLLKTGLTMNGGETEKGTTSQPRIARPPGDGRGKNQLLPRYWPRITDQELERLSGDLKSTVVPLFEKVLSASDAGRIGRLVLPKACAEAYFPHISHSEGLPLRVQDVKGNEWTFQFRFWPNNNSRMYVLEGVTPCIQAMELRAGDTVTFSRIDPGGKLVIGFRKSSNSTDTQDTSPSAHSNGVSAKGATFSGGTDNLPSRSNCGDFLRSPKGNGELRLNGHPESPHLSTGAADLLKTENREMTINNSLDQKISALEKKRTRNIGLKSKRLLIGNDDSMELRLTWEEAQDLLRPPPSVNPSIVTIEDQVFEEYDEPPVFGKRTIFSASSSGMKEQWAQCDDCSKWRKLPVDALLPPKWTCSENDWDTSRSSCSAPEELSSRELENLMKTSKDFKKRRIVENNKLIQEHEPSGLDALASLAVMGENLIDPNDSSAGATTKHPRHRPGCSCIVCIQPPSGKGRHKPTCTCNVCTTVKRRFKTLMLRKKKRQSEREADAAAKREQIHKRDDNLDTDTNGGASRDDANPLEKEGGLNRSQTEVGESSAGKIDLNSDPNREDSQLDNIAKLRRQLSERMNMNQNGGVRTINTEMQEGQQHSSLVNQSNGEDKRNLSDERCIASINLNKERRDEVYSQSNENQNNMS 911
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g00824 911 ProSiteProfiles B3 DNA-binding domain profile. 336 437 IPR003340 GO:0003677
Trre5g00824 911 MobiDBLite consensus disorder prediction 434 474 - -
Trre5g00824 911 MobiDBLite consensus disorder prediction 876 901 - -
Trre5g00824 911 CDD B3_DNA 334 435 IPR003340 GO:0003677
Trre5g00824 911 MobiDBLite consensus disorder prediction 860 875 - -
Trre5g00824 911 Gene3D - 595 649 - -
Trre5g00824 911 MobiDBLite consensus disorder prediction 805 819 - -
Trre5g00824 911 Pfam B3 DNA binding domain 336 436 IPR003340 GO:0003677
Trre5g00824 911 MobiDBLite consensus disorder prediction 280 308 - -
Trre5g00824 911 MobiDBLite consensus disorder prediction 752 831 - -
Trre5g00824 911 FunFam B3 domain-containing transcription repressor VAL1 314 441 - -
Trre5g00824 911 MobiDBLite consensus disorder prediction 860 911 - -
Trre5g00824 911 MobiDBLite consensus disorder prediction 756 785 - -
Trre5g00824 911 MobiDBLite consensus disorder prediction 434 500 - -
Trre5g00824 911 Gene3D - 314 441 IPR015300 -
Trre5g00824 911 SUPERFAMILY DNA-binding pseudobarrel domain 334 438 IPR015300 -
Trre5g00824 911 Pfam CW-type Zinc Finger 605 647 IPR011124 GO:0008270
Trre5g00824 911 SMART B3_2 336 437 IPR003340 GO:0003677
Trre5g00824 911 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 8 863 - -
Trre5g00824 911 ProSiteProfiles Zinc finger CW-type profile. 600 650 IPR011124 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g00824 Trre-Chr5 5620601 5626744 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g00824 1 852 B3 DNA Binding Superfamily AT2G30470 47.448 0.0 688
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre5g00824 B3 1.2e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g00824 K09287 - gmx:100789848 1352.42
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g00824 5 5620601 5626744 Trre5g00824 5 5620601 5626744 ECH