Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g00818 ATGTCGTATGTCCCTCCACACTTGAGAAACGCCAGTTCAACCACCACCACCACCACTACCGCCGCCGCAACTAAACCTTCATCAACCGGAACCCTAGACAACAACCACCACCATCATCATCATCATAACAACAACAACCTCGCATTCTCAAACTCACACTCCAATACTCCTTCTCTCTTCAATGCCTCTCGCCGTACCTCCGCCGCTCCTCCGCAGTCGCGGATTACCGCCATTCCTGATACTGTTTTCCCTAACTGGCAACCTTCTGAACGTGTTTCTCGCATGAACCCTGACCTGATTGAAGAGGTGCGCTTACGGCTTAATCTAGATGTTACTGTTTCGTCCGACTCTCCTGCTGCACCTGGACCTATAGAATCGTTTAATGATATGTGTTTGAATCCAAGTATCATGAAGGACATTGCTTATCATGAATACACCAGGCCAACTTCTATCCAGGCACAGGCCATGCCTATTGCTCTTAGTGGAAGGGATCTTTTGGGTTGTGCTGAAACTGGTAGTGGGAAGACTGCAGCTTTCACGATTCCTATGATACAGCATTGCTTGGCCCAGCCTCCAATTCGGCGAGGAGATGGTCCCCTGGCATTAGTTTTGGCTCCTACTAGAGAACTTGCTCAACAAATAGAAAAAGAGGTCCAAGCTTTTAGCAGATCTCTCGAGTCATTAAAAACTGCCATAGTTGTAGGTGGTACTAACATTGAAAAGCAGAGGTCGGAACTAAGAGCAGGAGTTGAAATAGCAGTTGCCACCCCTGGGAGATTCATTGACCACTTACAACAAGGCAACACTTCTCTCTCCAGAATTTCTTATGTTGTTCTAGACGAGGCTGATAGAATGCTTGATATGGGTTTTGAACCACAGATAAGGGAGATAATGAGAAGTCTTCCAGAGAAGCACCAAACACTGCTGTTTAGTGCAACTATGCCTGTGGAGATTGAAGCATTAGCAAAGGAGTACTTAACTAACCCTGTGCAAGTTAAGGTGGGAAAAGTGAGCAGTCCAACAACTAATGTTTCACAAACTCTTATAAAGGTTTCTGAAAGTGAGAAGATTGATCGACTCTTAGATTTGCTTGTAGAGGAGGCATCACAAGCTGAAAAGTGTGGTCATCCATTTCCGTTGACAATTGTGTTTGTTGAGAGAAAGACAAGGTGTGATGAAGTTGCTGAAGCATTGGTTGCTCAAGGATTATCTGCAGTTTCACTGCATGGTGGCCGCAGTCAGAGTGAAAGAGAGTCTGCTTTGCATAACTTTCGGAGTAGCTCAACCAGCATTTTGGTTGCTACGGATGTTGCATCTCGGGGTTTGGATGTCACAGGAGTGTCACACGTTATAAATCTTGATCTTCCAAAGACCACAGAAGATTATATACACCGGATTGGAAGGACGGGGCGAGCAGGATCAACCGGCATAGCCACTTCCTTTTACACAGATCGTGACATGTTCCTTGTGACAAATATAAGGAAAGCAATAGCTGATGCTGAATCTGGGAACGCTGTGGCATTCGCTACTGGAAAGGTTGCCAGAAGAAAGGAGAAAGAAGCAGCAGCTGCACACAAAGAGGCAAGCATTGCTTTATCTAGACACCTTGGATCGGGAGCAGCTTCAATTAACATTGAAGATAAGTATAGATTCATGATTACTGCCCCAAACAGTAAAAAAGAGGGCGCAGCAGATAGTGCATGGGATGATTGA 1713 0.4548 MSYVPPHLRNASSTTTTTTTAAATKPSSTGTLDNNHHHHHHHNNNNLAFSNSHSNTPSLFNASRRTSAAPPQSRITAIPDTVFPNWQPSERVSRMNPDLIEEVRLRLNLDVTVSSDSPAAPGPIESFNDMCLNPSIMKDIAYHEYTRPTSIQAQAMPIALSGRDLLGCAETGSGKTAAFTIPMIQHCLAQPPIRRGDGPLALVLAPTRELAQQIEKEVQAFSRSLESLKTAIVVGGTNIEKQRSELRAGVEIAVATPGRFIDHLQQGNTSLSRISYVVLDEADRMLDMGFEPQIREIMRSLPEKHQTLLFSATMPVEIEALAKEYLTNPVQVKVGKVSSPTTNVSQTLIKVSESEKIDRLLDLLVEEASQAEKCGHPFPLTIVFVERKTRCDEVAEALVAQGLSAVSLHGGRSQSERESALHNFRSSSTSILVATDVASRGLDVTGVSHVINLDLPKTTEDYIHRIGRTGRAGSTGIATSFYTDRDMFLVTNIRKAIADAESGNAVAFATGKVARRKEKEAAAAHKEASIALSRHLGSGAASINIEDKYRFMITAPNSKKEGAADSAWDD 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g00818 570 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 356 514 IPR001650 -
Trre5g00818 570 MobiDBLite consensus disorder prediction 1 74 - -
Trre5g00818 570 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 114 525 - -
Trre5g00818 570 FunFam probable ATP-dependent RNA helicase DDX17 85 335 - -
Trre5g00818 570 Pfam DEAD/DEAH box helicase 149 319 IPR011545 GO:0003676|GO:0005524
Trre5g00818 570 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 197 493 IPR027417 -
Trre5g00818 570 Pfam Helicase conserved C-terminal domain 356 473 IPR001650 -
Trre5g00818 570 Coils Coil 211 231 - -
Trre5g00818 570 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 125 153 IPR014014 GO:0003724
Trre5g00818 570 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 156 332 IPR014001 -
Trre5g00818 570 MobiDBLite consensus disorder prediction 1 31 - -
Trre5g00818 570 Gene3D - 338 530 IPR027417 -
Trre5g00818 570 CDD DEADc 136 333 - -
Trre5g00818 570 CDD SF2_C_DEAD 344 482 - -
Trre5g00818 570 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 278 286 IPR000629 -
Trre5g00818 570 SMART helicmild6 392 473 IPR001650 -
Trre5g00818 570 MobiDBLite consensus disorder prediction 45 74 - -
Trre5g00818 570 SMART ultradead3 144 347 IPR014001 -
Trre5g00818 570 Gene3D - 87 336 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g00818 Trre-Chr5 5582063 5589798 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g00818 125 495 Eukaryotic Initiation Factors Gene Family AT1G72730 35.200 2.41e-69 228
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g00818 K12823 - gmx:100818387 902.894