Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g00813 ATGAAAGTACAATCAACTATGAAGCTTCAAAATCCGAAGCAAAACCCTTCAAGATCAAATTTTGAAACAAACCCATCATGCAAAACCGCCACAAATACCCAAAACCGCAACAAAAAACTTATCCGGATCATCCTCACCGACTATGACGCAACCGATTCCGACTCTTCCGACGACGAAAAGAGAAGAAACCCATCAAAATTTCGAAGAGGAAAAAGAGAAATTACTCAAATCACCATGCAATACCCTCCTGTTTCTAATTCTCCAACAATTTCACCTTCTTCTTCATCTTGCTCCGTTGACCCGACCCGTTTCAAAAGACCCAGAAAATTACCCACCGGTTCTAACAGTTCTCGCCGGCAAAGTATGTACCGTGGCGTTCGTCAGAGACCTTGGGGTCGGTGGACAGCTGAGATCTGTGACCCGAACAAAAGAAAACGGGTCTGGTTAGGAACTTTTAACACGGCGGAGGAAGCCGCCGCTAAGTACGACGAAGCCGCCGTGAAATTTAAGGGTTCAAAAGCCGTTACCAACTTTCCAAACCGCGCCGCCGTTAAGAAGGAAGTTAACGAGCCAGCGAAGATTTTCTCCGGCGACGGTTTTGCTTCTCCGACTTCTGTTCTGCCTTTGTACGACGGTGATTCAACGCCGTTTGACAGTTTACGTTACGGCGCTGTGGATGCTTTTGGGTTCGAAATTGACGCGCCGTTAAGTTTAACGGACGTTAACTTTGTTCCGTTTGGGAAAGAAAAAGAAGAGTTTGGTGAGTTTGACTTGGACGAGTTCTTGACGTGGCCAAGTTAA 801 0.4619 MKVQSTMKLQNPKQNPSRSNFETNPSCKTATNTQNRNKKLIRIILTDYDATDSDSSDDEKRRNPSKFRRGKREITQITMQYPPVSNSPTISPSSSSCSVDPTRFKRPRKLPTGSNSSRRQSMYRGVRQRPWGRWTAEICDPNKRKRVWLGTFNTAEEAAAKYDEAAVKFKGSKAVTNFPNRAAVKKEVNEPAKIFSGDGFASPTSVLPLYDGDSTPFDSLRYGAVDAFGFEIDAPLSLTDVNFVPFGKEKEEFGEFDLDEFLTWPS 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g00813 266 Pfam AP2 domain 123 171 IPR001471 GO:0003700|GO:0006355
Trre5g00813 266 PRINTS Ethylene responsive element binding protein signature 123 134 IPR001471 GO:0003700|GO:0006355
Trre5g00813 266 PRINTS Ethylene responsive element binding protein signature 145 161 IPR001471 GO:0003700|GO:0006355
Trre5g00813 266 MobiDBLite consensus disorder prediction 109 123 - -
Trre5g00813 266 SMART rav1_2 122 185 IPR001471 GO:0003700|GO:0006355
Trre5g00813 266 MobiDBLite consensus disorder prediction 54 73 - -
Trre5g00813 266 MobiDBLite consensus disorder prediction 78 101 - -
Trre5g00813 266 MobiDBLite consensus disorder prediction 1 127 - -
Trre5g00813 266 FunFam Ethylene-responsive transcription factor 2 121 180 - -
Trre5g00813 266 Gene3D AP2/ERF domain 122 181 IPR036955 GO:0003700|GO:0006355
Trre5g00813 266 ProSiteProfiles AP2/ERF domain profile. 122 179 IPR001471 GO:0003700|GO:0006355
Trre5g00813 266 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 38 186 - -
Trre5g00813 266 PIRSF PTI6 7 266 IPR017392 GO:0003700
Trre5g00813 266 SUPERFAMILY DNA-binding domain 121 180 IPR016177 GO:0003677
Trre5g00813 266 CDD AP2 121 180 IPR001471 GO:0003700|GO:0006355
Trre5g00813 266 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g00813 Trre-Chr5 5561840 5562640 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g00813 39 207 AP2-EREBP Transcription Factor Family AT4G27950 43.646 3.14e-33 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Trre5g00813 AP2 5.1e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g00813 K13434 - gmx:102660028 271.166