Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g00811 ATGATCCCACAACAAGAATCTGAGTTTGATATCGGTTATCTCAAACCATACTACGGAAAGCTGTTTCCTTATGCTGATATGTTTAAATGGATGTCTTACGGCCACGATGGGAAACATCCTGGTTGTGATCACTCCTACTTTGGAAGGAGGGAATTTTCCTTCACTCTCAAAGGTGATTTTTATCTGCGCTTCCAATCTTTCAACACTGCACTTGAGCTCGAAAACTCCATCAAAGAAAAATGCCCTTTAAAGATTGACATTGGACCTGTCTACACTGTCGATCCTGCAAAAAGGCATGCCTATGCACAAGGTGATAATAAAGTCTTCACTCCAGTTGAGAGAGAGTTGATTTTTGATCTAGATATGACAGATTATGATGATGTCAGATACTGTTGCAAGGGTGCTGATGTTTGCTTGGATTGCTGGCCATTGATGACCATAGCCATCAAAGTGATTGATGCTTCCTTAAGAGATGACTTTGGTTTTAAGCACATACTCTGGGTCTATAGTGGACGCAGAGGTGTTCATTGTTGGGTGTGTGATGGGAAGGCAAGAAGGTTGACTAATGAGCAAAGAGCTTCTATTGCTGACTATTTTCGTGTTTACAAGGGCAATGAAAATAGTCATAAGAAGGTTTCCTTGATGGGTGCTGCTCTTCATCCTTTCTTGGCGACATCATACACAAACGTTCTCAAGGATTATTTTGAGAAAATATTGCTTACAAATCAAAACTTACTTGCTACTGAGGAGAGATATGAGAAGATCCTAAGCATGATTCCTGATGAATCTATTGCTTCTAAACTTAGGGGAAGATGGCAAGATAATAATAGGAGGTCCTCTAGCGCAAAAGAAGATATTAATGTTGTGCGATGGGAACAGTGCAAGCAGCTGCTGCAATCTGGAAAACATAAGGCACAAGGGTTGGGTAGATGCGTGGAAGAGATTGTGTTCTTCTTTACTTACCCCAGGCTAGATATGGAGGTTTCAAAACATATGAATCATTTGCTTAAAGCACCATTCTGTGTACATCCAAAAACAGGTCGTGTTTGTGTCCCTATTGATCCAAATCGGTGTGACGAGTTTGATCCTACTACAGTACCCACCCTTTTCCAGCTTCTAGAAGAGCTTAATAATGAAGGCTTGAGAGCTGATGTTAATGGTGCAGAATGGAGTGGAACTTCGCTTGGAAGTGCCATCACGCTTTTCAGATCGTCATTCTTAGAACCTTTGTTAAAAGCCAGCAAGGAGGAGATAGAAAGATCCTATAGTTTAAAGTTGCAGCAGTCAAAGAACTCCATAGGTTGGTAA 1308 0.4098 MIPQQESEFDIGYLKPYYGKLFPYADMFKWMSYGHDGKHPGCDHSYFGRREFSFTLKGDFYLRFQSFNTALELENSIKEKCPLKIDIGPVYTVDPAKRHAYAQGDNKVFTPVERELIFDLDMTDYDDVRYCCKGADVCLDCWPLMTIAIKVIDASLRDDFGFKHILWVYSGRRGVHCWVCDGKARRLTNEQRASIADYFRVYKGNENSHKKVSLMGAALHPFLATSYTNVLKDYFEKILLTNQNLLATEERYEKILSMIPDESIASKLRGRWQDNNRRSSSAKEDINVVRWEQCKQLLQSGKHKAQGLGRCVEEIVFFFTYPRLDMEVSKHMNHLLKAPFCVHPKTGRVCVPIDPNRCDEFDPTTVPTLFQLLEELNNEGLRADVNGAEWSGTSLGSAITLFRSSFLEPLLKASKEEIERSYSLKLQQSKNSIGW 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g00811 435 SUPERFAMILY Prim-pol domain 9 378 - -
Trre5g00811 435 NCBIfam eukaryotic-type DNA primase catalytic subunit PriS 15 371 IPR014052 GO:0003896|GO:0006269
Trre5g00811 435 Pfam DNA primase small subunit 118 354 IPR002755 GO:0003896|GO:0006269
Trre5g00811 435 PANTHER DNA PRIMASE SMALL SUBUNIT 6 420 - -
Trre5g00811 435 CDD AE_Prim_S 23 363 IPR014052 GO:0003896|GO:0006269
Trre5g00811 435 Gene3D DNA primase, PRIM domain 2 416 - -
Trre5g00811 435 FunFam DNA primase 1 416 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g00811 Trre-Chr5 5546507 5552199 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g00811 3 435 Core DNA Replication Machinery Family AT5G41880 66.282 0.0 619
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g00811 K02684 - gmx:100780574 772.696