Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g00807 ATGGCGAGTTTCTTTACTGATTTGGTGAAGCCATATGTGGAGAAATTGATAAATGGGGCAATCACAGAATCAAGTTATATATGTTGCTTCACGTGCATTGCTAAGGAATTTGAAGATGAGAAAGCTAAGTTGGAAGTAGAAAGGACAACTTTCAACCAACAAGTTGATGTAGCAACTAGAGGAGGGGAAGATGTTCAAGCAAGTGCTCTTTTTTGGGAAGAACAAGCTGTAGATCTCATTCAAGAAGACACCAAAACAAAACAAAAATGTTTTTTTGGCTTTTGTTGTCATTGCATATGGCGATATAGAAGGGGAAAGGAACTGGCAAATAAGAAGGAGCAAATCAAAAAATTGATTGAAACTAGAAAGGAACTTGCAATTGGACTACCTACTCATCTTCCCGATGTTGAACGTTATTCATCCCAACACTATATTCCTTTTAAAAGTAGGGAATCCAAATGCAAAGAGCTTTTAGATGCACTGAAAGATGACAACAAGTATATAGTCGGGTTGCATGGGATGGGGGGCACAGGAAAAACTACACTGGCCAAAGAAGTGGGTAAGGAACTTAAGCAGTCCAAACAATTTACTCAAGTCATCGATACGACAGTGTCATTTTCTCCTGATATTAAAAAGATTCAAGATGATATTGCTGGACCCTTGGGATTGAAATTTGATGACTGTAATGAATCAGACCGATCAAAAAAACTATGGAGCCGATTAACCCATGGCGAGAAGATTCTCATAATATTGGATGATGTGTGGGGAGATATCGATTTTGATGAAATAGGGATTCCACAAAGTGACAATCGCAAAGGCTGCCGTGTTTTTGTAACCACCCGCAATCTGCAGGTGTGCAACAAACTAGGATGCAGTAGCACAATCCGGCTAGATCTCTTGTCTGAAGAAGACGCATGGATCATGTTCCAAAGGCATTCTGGTCTAAGCGAAGTTTCAACAAAAAATTTGCTTGACAGGGGCCGTAAAATTGCAAATGAATGCAAAAGGGTACCAATTGCAATTGCTGCTATTGCAAGTAGTTTAAAGGGAGAACAACGTCAGGAAAAGTGGGATGTGGCCTTAAGTTCCTTGCAGAAACATATGTCCGTCGATGGTGTTGATAATGATTTGGCTTACATTTATAAATGTTTAAAGTTTAGCTATGATTATCTCAAGAACAAAAATGCTGAGGAATTGTTCCTCTTAAGTTCTGTATTCCAAGAAGATGAAGAAATCTCTACTGAAATTCTGACTAGGCTTTGCGTAGGAGTTGGCCTCTTTGGGGAACATAATGACAAATACAACAATGCTCGAAATCTAGTAGTTGTAGCAAAAGATAAACTACTTGATTCATGTTTACTGTTGAAGTCATACGAAGGACATGTAAAAATGCATGACTTGATTCGTGAAGTAGCCCAGTGA 1422 0.3882 MASFFTDLVKPYVEKLINGAITESSYICCFTCIAKEFEDEKAKLEVERTTFNQQVDVATRGGEDVQASALFWEEQAVDLIQEDTKTKQKCFFGFCCHCIWRYRRGKELANKKEQIKKLIETRKELAIGLPTHLPDVERYSSQHYIPFKSRESKCKELLDALKDDNKYIVGLHGMGGTGKTTLAKEVGKELKQSKQFTQVIDTTVSFSPDIKKIQDDIAGPLGLKFDDCNESDRSKKLWSRLTHGEKILIILDDVWGDIDFDEIGIPQSDNRKGCRVFVTTRNLQVCNKLGCSSTIRLDLLSEEDAWIMFQRHSGLSEVSTKNLLDRGRKIANECKRVPIAIAAIASSLKGEQRQEKWDVALSSLQKHMSVDGVDNDLAYIYKCLKFSYDYLKNKNAEELFLLSSVFQEDEEISTEILTRLCVGVGLFGEHNDKYNNARNLVVVAKDKLLDSCLLLKSYEGHVKMHDLIREVAQ 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g00807 473 Pfam NB-ARC domain 154 389 IPR002182 GO:0043531
Trre5g00807 473 PRINTS Disease resistance protein signature 168 183 - -
Trre5g00807 473 PRINTS Disease resistance protein signature 241 255 - -
Trre5g00807 473 PRINTS Disease resistance protein signature 334 348 - -
Trre5g00807 473 FunFam Probable disease resistance protein At1g61300 131 293 - -
Trre5g00807 473 Gene3D - 300 386 IPR042197 -
Trre5g00807 473 Gene3D - 131 295 IPR027417 -
Trre5g00807 473 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 142 393 IPR027417 -
Trre5g00807 473 PANTHER NB-ARC DOMAIN-CONTAINING PROTEIN-RELATED 35 473 - -
Trre5g00807 473 Coils Coil 34 54 - -
Trre5g00807 473 Gene3D - 387 473 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g00807 Trre-Chr5 5526416 5527837 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g00807 169 473 WRKY Transcription Factor Family AT5G45050 23.511 1.34e-08 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g00807 - - tpra:123913720 780.4