Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g00805 ATGAAGTTCTATTCTGTTTCGGTGGTTTCTTTCCTTTTTGTCGTTGCTATTTTGTTACCGCTTGCTATTGGTGCCGACCTTAGTTCCGATAAGCAAGCCCTTCTTGATTTTATCAATGCCGTGCCACACCGTCGAAACCTGACATGGGATCCATCCACCTCAATCTGTATATCTTGGGTTGGCATCACTTGCAATCAAAATGGAACTCGAGTTGTTACTGTCCGGCTCCCAGGAGTCGGACTAGTTGGCTCCATTCCACCCAATACACTCGGAAAGCTTGATGCCGTGAAGATTATTAGCCTTCGTTCCAACCTACTCGGTGGAAATCTTCCTACTGACATTGCTTCTCTTCCGTCTCTTCAGTATCTCTACCTCCAGCGTAATAACTTTTCTGGTGATATTCCTACCTCATTGTCGCCCCAACTAGTTGTACTTGATTTGTCTTATAATTCTTTCTCCGGTAGAATTCCAAAGTCATTACAAAATTTGACAGGACTAAATAGTTTGAATCTCCAAAATAACTCACTGTCGGGAACCATACCTAATCTCAATATTACAAAGCCCGGTAATTTGAATTTAAGCTACAACAATTTGAGTGGACCTATCCCTTCATCCCTTCGGGATTATCCTAATTCATCGTTTGAAGGAAACTCTGGTTTATGTGGACCACCTCTAAAGTCGTGCTCTACGATTCCATCTACACCTTCTCCTGCCTCGACTCCTATTCCATCTGTAAAACGAAGCTCCAAAAATAAATTAAGTAAGATAGCTATCATTGCCATTGCAGTTGGAGGAGCCATGCTGCTATTTTTTGTAGCACTTGTTATTGTTTTCTGCTGTTTGAAGAAGGATAATGACGAAAGCTCCAGAGAAATTAAAGGAAAGGGTCCTGGTGGCGGCGGCGGTGGCGGTGGTAGGGGTGATAAGCCAAAAGAAGAGTTTGGGAGTGGAGTGCAAGAACATGAGAAGAACAAGTTGGTTTTCTTTGAAGGAAGTTCTTATAATTTTGATCTTGAAGACTTGCTTAGAGCTTCAGCTGAAGTTCTTGGAAAAGGTAGCTATGGTACCTCATATAAGGCTATATTGGAGGAAGCAATGACAGTTGTTGTGAAGAGGTTGAAAGAAGTTGTGGTAGGCAAAAAGGAGTTTGAACAACAGATGGAGATTATGGGAAGGGTCGGACAACACGCGAACGTTGTACCGCTTCGTGCTTATTATTATTCAAAAGATGAAAAGCTTATGGTTTATGACTATATCCCAGCTGGCAATTTATCCACACTCTTGCATGGAAGTCGATCAGGTGGAAGAACTCCATTAGATTGGGACTCGAGAGTAAAAATATCTCTTGGAACTGCAAGAGGACTTGCGCACATCCATTCTGTCGGAGGTACCAAATTCACACATGGAAATATTAAGTCCTCAAATGTCCTCATCAACCAAGATAACGACGGCTGCATTTCTGATTTCGGTCTGACCTCACTTATGAATGTTCCTGCAAACCCTTCTAGAGCTGCAGGATACCGCGCACCTGAGGTGATTGAAACCCGTAAGCACTCCCATAAATCAGATGTCTACAGCTTTGGTGTCCTCCTTCTTGAACTGCTTACAGGTAAAGCGCCTCTCCAATCTCCTGGACGTGACGATATGGTTGATCTCCCTAGGTGGGTTCAGTCTGTCGTTCGAGAGGAGTGGACAGCCGAGGTTTTTGATGTTGAGCTAATGAGGTACCAAAACATCGAAGAAGAAATGGTGCAAATGTTACAAATTGCCATGGCTTGTGTAGCAAAAGTGCCTGATATGAGACCTAACATGATAGAAGTGGTGAGAATGATCGAAGAGATCCGGCTATCTGACTCAGAGAACCGACCGTCTTCCGAAGAGAATAAATCTAAGGACTCAAATGTTCAGACTCCATAG 1917 0.4324 MKFYSVSVVSFLFVVAILLPLAIGADLSSDKQALLDFINAVPHRRNLTWDPSTSICISWVGITCNQNGTRVVTVRLPGVGLVGSIPPNTLGKLDAVKIISLRSNLLGGNLPTDIASLPSLQYLYLQRNNFSGDIPTSLSPQLVVLDLSYNSFSGRIPKSLQNLTGLNSLNLQNNSLSGTIPNLNITKPGNLNLSYNNLSGPIPSSLRDYPNSSFEGNSGLCGPPLKSCSTIPSTPSPASTPIPSVKRSSKNKLSKIAIIAIAVGGAMLLFFVALVIVFCCLKKDNDESSREIKGKGPGGGGGGGGRGDKPKEEFGSGVQEHEKNKLVFFEGSSYNFDLEDLLRASAEVLGKGSYGTSYKAILEEAMTVVVKRLKEVVVGKKEFEQQMEIMGRVGQHANVVPLRAYYYSKDEKLMVYDYIPAGNLSTLLHGSRSGGRTPLDWDSRVKISLGTARGLAHIHSVGGTKFTHGNIKSSNVLINQDNDGCISDFGLTSLMNVPANPSRAAGYRAPEVIETRKHSHKSDVYSFGVLLLELLTGKAPLQSPGRDDMVDLPRWVQSVVREEWTAEVFDVELMRYQNIEEEMVQMLQIAMACVAKVPDMRPNMIEVVRMIEEIRLSDSENRPSSEENKSKDSNVQTP 638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g00805 638 Gene3D Ribonuclease Inhibitor 27 185 IPR032675 -
Trre5g00805 638 Pfam Leucine rich repeat N-terminal domain 28 65 IPR013210 -
Trre5g00805 638 ProSiteProfiles Protein kinase domain profile. 343 616 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g00805 638 SUPERFAMILY L domain-like 33 224 - -
Trre5g00805 638 CDD STKc_IRAK 349 614 - -
Trre5g00805 638 MobiDBLite consensus disorder prediction 287 316 - -
Trre5g00805 638 FunFam Leucine-rich repeat receptor-like protein kinase 140 228 - -
Trre5g00805 638 FunFam pollen receptor-like kinase 1 311 418 - -
Trre5g00805 638 SUPERFAMILY Protein kinase-like (PK-like) 347 621 IPR011009 -
Trre5g00805 638 Gene3D Transferase(Phosphotransferase) domain 1 419 637 - -
Trre5g00805 638 Gene3D Phosphorylase Kinase; domain 1 311 418 - -
Trre5g00805 638 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 419 626 - -
Trre5g00805 638 Gene3D Ribonuclease Inhibitor 186 229 IPR032675 -
Trre5g00805 638 FunFam Leucine-rich repeat receptor-like protein kinase 29 139 - -
Trre5g00805 638 MobiDBLite consensus disorder prediction 617 638 - -
Trre5g00805 638 Pfam Protein kinase domain 346 608 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g00805 638 PANTHER OS05G0588300 PROTEIN 11 626 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g00805 Trre-Chr5 5512129 5514492 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g00805 3 636 Receptor kinase-like Gene Family AT5G58300 65.373 0.0 827
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Trre5g00805 Pkinase 1.2e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g00805 - - gmx:100796171 1011.52