Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g00800 ATGAATCTTTCAAAGGGTTGTTGCAAGAATGAAATTGTTTTCATCATCTTATGGTTCTGCTGCCATTTGATACCGGCTGCTGCGCAAGTTATCAATGTCACGGACCCTACAGAAGTGCTAGCATTGAGGAACATACATGGAAGTTTGATTGATCCAAATGGACATTTGAGCAATTGGAATAGTGATGGAGATCCATGCCTATCTAACTGGACAGGAGTTGTGTGTTCTAATGAAACAATTGAAGAAAACTTTCTACATGTTGTAGAATTGGAACTACTGAGATTGAACTTGTCTGGAAAATTGGCACCGGATATTGGCAACTTAGCTTATTTGAAAATACTGGATTTCATGTGGAACAACATAAGTGGGGGAATTCCAGTGGAAATTGGCAATATCAAATCTTTGGAACTAATATTCCTAAGTGGAAATGAATTAACAGGACCAGTGCCAGAGGAACTTGGCTTTCTTCCAAACCTACGAATAATGCAAATTGATGATAACAAATTATCAGGACCTATACCTTTATCATTTGCAAATTTGAACAAAACAAAACACTTTCACATGAACAATAATTCCCTTAGCGGGCAAATTCCAGCAGAATTTTCCAAATTACCAAACCTTATTCATCTGCTTCTGGACAACAATAACTTGTCAGGAATTCTTCCACCTGAGCTATCTAAAATGCCAAACTTGACTATACTCCAACTTGACAACAATAACTTTGGTGGAAATAGCATTCCAGATACTTATGCCAACATGACAAAACTGGTGAAGTTGAGCCTTAGGAATTGCAACTTGCAAGGACCAATTCCTGATTTAAGCCAGATACCACACCTCCTTTATATTGACCTCAGCTTCAATCAGTTGAATGAATCAATTCCTCCTAATAAGCTTGGTGAAAATATCACAACAATTATTTTATCGAACAACAATCTTACCGGAACTATTCCATCCAATTTTTCTCGTCTTCCACGTCTCCAGAAACTGTCGCTTGCAAACAATTTATTGAGTGGGAGTGTTCCTTCCACAATTTGGCAAAACAAGATTTCAAATGCTGCGGAAAGATTGCAATTAGAATTGCAAAATAACCAATTTATAAGCATATCAGGCAGTACTAACCTTCCACCAAATGTTACACTCTTGCTTGATGGGAATCCCTTATGCTCAGATAACACACTGAATCAGTTCTGTAAAGTTGAAGGAGCTAGAATTGAAACAAAAGGCACATCTCCAACAAACTTCAGTGACTCTTGTCCGAATCAAAGATGTCCGCCTCCTTATGAATTCTACGTGGAATGTTTCTGCGTGGCTCCATTGATTATTGGTTATCGATTGAGAAGTCCTGGTTTTTCAGATTTTCCGCCATATTTCAATGCATTTGAGCAATACTTGACTTCAAATCTTAAGTTACAAGCCAATCAGATAAGCTATACTTTTGAGTGGCAAGTAGGACCTCGAATTTTAATGATCTTGAAGATTTTTCCTGAATATGTTGATAAAAATAGTTCTCGCAAATTCAATTCAAGTGAGATTCAACGGATCAGAAACATGTTCACTGGATGGACCATTCCTAATCGTGATTTGTTTGGGCCTTATGATCTGATGGACCTGCCTCCGTATAATAATGGGATTAACACTTCTTCAAAATCAGACATAAGCACGGGTGCTTTGGTTGGCATAATCTTAGGCTCAATTGCGTGTGTAATATCGTTGTCTGCTGTTTTCATTCTTTTAATATTAAGAATAAGATTAAGACGTCATGACGCAGTTTCCAAGCCACGTCATTCATCTATGATCTCAATACAAATTGATGGCACAAGAGCCTTTACTTATGAAGAGTTGTCCGTTGCTACAAACAATTTTGACAGCAATGCTCAAATTGGACAAGGAGGCTATGGGAAGGTTTATAAAGGTATTCTTTCTAGTGGCACGGTGGTAGCCATAAAGCGTGCACAGCAAGGATCACTGCAAGGTGAGAAGGAGTTCCTTACAGAAATATCAATACTATCAAGGTTACATCACCGAAACCTTGTGCCTCTAGTTGGATACTGTGACGAAGAAGGTGAACAGATGCTGGTTTATGAATTTATGTCAAATGGCACACTAAGAGACCACCTTTCTGTTACATCAGAAAAGCCTTTGACTTTTGCTATGAGATTGAAGATAGCATTAGAATCAGCTAAAGATTTTGGACTTTCACGGCTTGCCCCAGTTCCAGATGTTCAAGGAATTATACCTGGTCATGTATCCACAGTAGTAAAAGGGACCCCGGGTTACCTTGATCCGGAGTACTTCTTAACTCACACGTTAACCGACAAGAGTGATGTTTACAGTCTTGGTGTTGTATTTCTTGAACTTTTGACTGGGATGCACCCTATTTCACATGGCAAAAATATTGTTAGAGAGGTTAATGTTGCATACGAATCGGGTGAGATTTCTTCAGTTATTGATGAACACATGGGGTCTTATCCATCTGATCATGCTGAGAAGTTTTTAAATTTGGCCCTAAAGTGTTCCGAAGACGAACCAGAACCGCGTCCTAAAATGGCAGTAGTGGTTAGAGAGCTTGAAAACATTTGTTCTATGATATCCGATTCAGATACCACGAGAGGTACATCTACAAGCACCGATTCTCGCAAAACAGTCAGCTTTCTAGGCAGTACACCTTCTTCATCCTCAGTCATAAAGATTTCTTCTGTATCAAGAAATGTATAA 2715 0.3867 MNLSKGCCKNEIVFIILWFCCHLIPAAAQVINVTDPTEVLALRNIHGSLIDPNGHLSNWNSDGDPCLSNWTGVVCSNETIEENFLHVVELELLRLNLSGKLAPDIGNLAYLKILDFMWNNISGGIPVEIGNIKSLELIFLSGNELTGPVPEELGFLPNLRIMQIDDNKLSGPIPLSFANLNKTKHFHMNNNSLSGQIPAEFSKLPNLIHLLLDNNNLSGILPPELSKMPNLTILQLDNNNFGGNSIPDTYANMTKLVKLSLRNCNLQGPIPDLSQIPHLLYIDLSFNQLNESIPPNKLGENITTIILSNNNLTGTIPSNFSRLPRLQKLSLANNLLSGSVPSTIWQNKISNAAERLQLELQNNQFISISGSTNLPPNVTLLLDGNPLCSDNTLNQFCKVEGARIETKGTSPTNFSDSCPNQRCPPPYEFYVECFCVAPLIIGYRLRSPGFSDFPPYFNAFEQYLTSNLKLQANQISYTFEWQVGPRILMILKIFPEYVDKNSSRKFNSSEIQRIRNMFTGWTIPNRDLFGPYDLMDLPPYNNGINTSSKSDISTGALVGIILGSIACVISLSAVFILLILRIRLRRHDAVSKPRHSSMISIQIDGTRAFTYEELSVATNNFDSNAQIGQGGYGKVYKGILSSGTVVAIKRAQQGSLQGEKEFLTEISILSRLHHRNLVPLVGYCDEEGEQMLVYEFMSNGTLRDHLSVTSEKPLTFAMRLKIALESAKDFGLSRLAPVPDVQGIIPGHVSTVVKGTPGYLDPEYFLTHTLTDKSDVYSLGVVFLELLTGMHPISHGKNIVREVNVAYESGEISSVIDEHMGSYPSDHAEKFLNLALKCSEDEPEPRPKMAVVVRELENICSMISDSDTTRGTSTSTDSRKTVSFLGSTPSSSSVIKISSVSRNV 904
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g00800 904 Pfam Protein tyrosine and serine/threonine kinase 624 728 IPR001245 GO:0004672|GO:0006468
Trre5g00800 904 MobiDBLite consensus disorder prediction 864 892 - -
Trre5g00800 904 SMART LRR_typ_2 323 347 IPR003591 -
Trre5g00800 904 SMART LRR_typ_2 228 252 IPR003591 -
Trre5g00800 904 SMART LRR_typ_2 204 227 IPR003591 -
Trre5g00800 904 SMART LRR_typ_2 276 301 IPR003591 -
Trre5g00800 904 Gene3D Ribonuclease Inhibitor 192 294 IPR032675 -
Trre5g00800 904 Gene3D Ribonuclease Inhibitor 36 191 IPR032675 -
Trre5g00800 904 FunFam Leucine-rich repeat protein kinase family protein 585 696 - -
Trre5g00800 904 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g06840 36 198 - -
Trre5g00800 904 SUPERFAMILY Protein kinase-like (PK-like) 606 869 IPR011009 -
Trre5g00800 904 PANTHER RECEPTOR-LIKE PROTEIN 55 47 860 - -
Trre5g00800 904 Pfam Leucine rich repeat N-terminal domain 37 76 IPR013210 -
Trre5g00800 904 ProSiteProfiles Protein kinase domain profile. 621 859 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g00800 904 SUPERFAMILY L domain-like 64 400 - -
Trre5g00800 904 Gene3D Transferase(Phosphotransferase) domain 1 728 880 - -
Trre5g00800 904 ProSitePatterns Protein kinases ATP-binding region signature. 627 649 IPR017441 GO:0005524
Trre5g00800 904 Pfam Leucine rich repeat 157 217 IPR001611 GO:0005515
Trre5g00800 904 Pfam Leucine rich repeat 301 345 IPR001611 GO:0005515
Trre5g00800 904 Pfam Protein kinase domain 729 853 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g00800 904 Gene3D Phosphorylase Kinase; domain 1 584 696 - -
Trre5g00800 904 Gene3D Ribonuclease Inhibitor 295 417 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g00800 Trre-Chr5 5469162 5476117 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g00800 20 868 Receptor kinase-like Gene Family AT5G01950 51.897 0.0 867
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VIII-1 Trre5g00800 Pkinase 1.6e-10 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g00800 - - gmx:100786467 1216.06