Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g00798 ATGCAAATTGATGATAACAAATTATCAGGACCTATACCTTTATCATTTGCAAATTTGAGCCAAACAAAGCACTTTCACATGAACAATAATTCCCTTAGCGGGCAAATTCCAGCAGAACTTTCCAAATTACCAAACCTTACTCATCTGCTTCTGGACAACAATAACTTGTCAGGAATTCTTCCACCTGAGCTATCCAAAATGCAAAACTTGACTATACTCCAACTCGACAACAATAACTTTGGCGGAAATAGCATTCCAGATACTTATGCTAACATGACAAAACTGGTGAAGTTGAGCCTTAGGAATTGCAACTTGCAAGGACCAATTCCTGATTTAAGCCAGATACCGCACCTCCTTTATATTGACCTCAGCTTCAATCAGTTGAGTGAATCAATTCCTCCTAATAAGCTTGGTGAAAATATCACAACCATTATTTTATCGAACAACAATCTTACTGGAACTATTCCATCCAATTTTTCTAGTCTTCCACGTCTCCAGAAATTGTCGCTTGCAAACAATTTATTGAGTGGGAGTGTTCCTTCCACAATTTGGCAGAACAAGATTTCAAATGCTGCAGAAAGATTGCAATTAGAGTTGCAAAACAACCAATTTATAAGCATATCAGGCAGTACTAACCTTCCACCAAATGTTACACTCTTGCTTGATGGGAATCCCCTATGTTCAGATGACACGCTGAATCAGTTCTGTAAAGTTGAAGGAGGTAGAAGTGAAACAAATGGCACATCTCCAACAAACTTCAGTGACTCTTGTCCAAATCAAAGATGTTCACCTCCTAAAGAATTCTATATGAATTGTGTCTGCGTGGCTCCATTGATTATTGATTATCGATTGAGAAGTCCTGGTTTTTCATATTTTCTGCCATATTCCAAAGCATTTGAGGAATACTTGACTTCACATCTTAAGTTACAAGCCAATCAGATAAGCTATACTTTTGAGTGGCAAGTAGGACCTCGAGTTTTTATGATCTTGAAGATTTTTCCTGAATATGCTGATAAAAATAGTTCTCTTATTTTCAATTCAAGTGAGATCCAACGGATCATAAACATGTTCACTGGATGGACCATTCCTAACCATGATTTGTTTGGGCCTTATGACCCGATGGGCCTGGTTCCTTATTATAATGGGACTAACACCTCTTCAAAATCAGACATAAGCACGGGAGCTTTGGTTGGCATAATCTTAGGCTCAATTGCGTGTGTGATATCGTTGTCTGCTGTTTTCATTCTGTTAATATTAAGATTAAGATTAAGACGTCATGATGCAGTTTCCAAGCCACGTCATTCATCTAAGATCTCGATACAAATTGATGGCACAAGAGCCTTTACTTATGAAGAGTTGTCCGTTGCTACAAACAATTTTGACAACAATGCTCAAATTGGACAAGGAGGCTATGGGAAGGTTTATAAAGGTTTTCTTTCTAATGGCACTGTCGTAGCCATAAAGCGTGCACAGCAAGGATCATTGCAAGGTGAGAAAGAATTTCTTACAGAAATTTCAATGCTATCAAGGATACATCATCGCAACCTTGTGTCTCTGGTTGGATACTGTGATGAAGAAGGCGAACAGATGCTGGTTTACGAATTTATGTCAAACGGCACACTAAGGGACCGCCTTTCTGTTACATCAGAAAAGCCTTTGAATTTTTCTATGAGATTGAAGATAGCATTAGAATCAGCTAAAGGTCTCATGTATCTGCACACAGAAGCTGATCCTCCGATATTTCACCGAGATGTTAAGTCAAGCAACATACTATTGGACTCTAAGTTCACTGCAAAAGTCGCAGATTTCGGACTTTCACGGCTTGCCCCAGTTCCAGATGTTCAAGGAATTATACCTGGTCATGTATCCACAGTGGTAAAGGGGACCCCGGGTTACCTTGATCCGGAGTACTTCTTAACTCACACGTTAACCGACAAGAGTGATGTTTATAGTCTCGGTGTTGTATTTCTTGAACTTTTGACTGGGATGCACCCTATTTCACATGGCAAAAATATTGTTAGAGAGGTTAATGTTGCATACGAATCGGGTGAGATTTCTTCAGTTATTGATGAACACATGGGGTCTTATCCATCTGATCATGATGAGAAGTTTTTAAATTTGGCCCTAAAGTGTTCCGAAGACGATCCAGAACCGCGTCCTAAAATGGCAGTGGTGGTTAGAGAGCTTGAAAACATTTGTTCTATGATGTCCGATTCAGATACCACGAGAGGTACATCTACAAGCACCGATTCTCGCAAAACAGTCAGCTTTCTAGGCAGTACACATTCTTCATCCTCAGTCATAAAGATTTCTTCTGTATCAAGAAATGTATAA 2334 0.3925 MQIDDNKLSGPIPLSFANLSQTKHFHMNNNSLSGQIPAELSKLPNLTHLLLDNNNLSGILPPELSKMQNLTILQLDNNNFGGNSIPDTYANMTKLVKLSLRNCNLQGPIPDLSQIPHLLYIDLSFNQLSESIPPNKLGENITTIILSNNNLTGTIPSNFSSLPRLQKLSLANNLLSGSVPSTIWQNKISNAAERLQLELQNNQFISISGSTNLPPNVTLLLDGNPLCSDDTLNQFCKVEGGRSETNGTSPTNFSDSCPNQRCSPPKEFYMNCVCVAPLIIDYRLRSPGFSYFLPYSKAFEEYLTSHLKLQANQISYTFEWQVGPRVFMILKIFPEYADKNSSLIFNSSEIQRIINMFTGWTIPNHDLFGPYDPMGLVPYYNGTNTSSKSDISTGALVGIILGSIACVISLSAVFILLILRLRLRRHDAVSKPRHSSKISIQIDGTRAFTYEELSVATNNFDNNAQIGQGGYGKVYKGFLSNGTVVAIKRAQQGSLQGEKEFLTEISMLSRIHHRNLVSLVGYCDEEGEQMLVYEFMSNGTLRDRLSVTSEKPLNFSMRLKIALESAKGLMYLHTEADPPIFHRDVKSSNILLDSKFTAKVADFGLSRLAPVPDVQGIIPGHVSTVVKGTPGYLDPEYFLTHTLTDKSDVYSLGVVFLELLTGMHPISHGKNIVREVNVAYESGEISSVIDEHMGSYPSDHDEKFLNLALKCSEDDPEPRPKMAVVVRELENICSMMSDSDTTRGTSTSTDSRKTVSFLGSTHSSSSVIKISSVSRNV 777
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g00798 777 PANTHER RECEPTOR-LIKE PROTEIN 55 2 732 - -
Trre5g00798 777 SMART serkin_6 460 732 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g00798 777 Gene3D Ribonuclease Inhibitor 1 84 IPR032675 -
Trre5g00798 777 MobiDBLite consensus disorder prediction 737 757 - -
Trre5g00798 777 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 1 84 - -
Trre5g00798 777 CDD STKc_IRAK 466 732 - -
Trre5g00798 777 SMART LRR_typ_2 67 91 IPR003591 -
Trre5g00798 777 SMART LRR_typ_2 43 66 IPR003591 -
Trre5g00798 777 SMART LRR_typ_2 162 186 IPR003591 -
Trre5g00798 777 SMART LRR_typ_2 115 140 IPR003591 -
Trre5g00798 777 FunFam LRR receptor-like serine/threonine-protein kinase HSL2 536 745 - -
Trre5g00798 777 Gene3D Phosphorylase Kinase; domain 1 430 535 - -
Trre5g00798 777 SUPERFAMILY L domain-like 3 238 - -
Trre5g00798 777 Gene3D Transferase(Phosphotransferase) domain 1 536 754 - -
Trre5g00798 777 Pfam Leucine rich repeat 140 184 IPR001611 GO:0005515
Trre5g00798 777 Gene3D Ribonuclease Inhibitor 85 276 IPR032675 -
Trre5g00798 777 Pfam Protein kinase domain 462 726 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g00798 777 SUPERFAMILY Protein kinase-like (PK-like) 434 729 IPR011009 -
Trre5g00798 777 ProSitePatterns Serine/Threonine protein kinases active-site signature. 580 592 IPR008271 GO:0004672|GO:0006468
Trre5g00798 777 FunFam Leucine-rich repeat protein kinase family protein 424 535 - -
Trre5g00798 777 ProSitePatterns Protein kinases ATP-binding region signature. 466 488 IPR017441 GO:0005524
Trre5g00798 777 ProSiteProfiles Protein kinase domain profile. 460 732 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g00798 Trre-Chr5 5457282 5462448 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g00798 1 741 Receptor kinase-like Gene Family AT5G01950 53.245 0.0 764
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VIII-1 Trre5g00798 Pkinase 2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g00798 - - gmx:100786467 1057.36